feat(utag_clustering_template): add utag_clustering_template and unit…#372
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fangliu117 merged 2 commits intodevfrom Aug 2, 2025
Merged
feat(utag_clustering_template): add utag_clustering_template and unit…#372fangliu117 merged 2 commits intodevfrom
fangliu117 merged 2 commits intodevfrom
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Pull Request Overview
This PR adds a new UTAG clustering template that ports functionality from NIDAP to a platform-agnostic Python implementation. The template provides spatial clustering analysis for single-cell data using the UTAG algorithm.
- Implements
run_from_json()function that loads AnnData, applies UTAG clustering with configurable parameters, and saves results - Adds comprehensive unit tests covering I/O workflows, parameter validation, and function calls
- Includes proper error handling for parameter conversion and input validation
Reviewed Changes
Copilot reviewed 2 out of 2 changed files in this pull request and generated 2 comments.
| File | Description |
|---|---|
| src/spac/templates/utag_clustering_template.py | Main template implementation with parameter parsing, UTAG clustering execution, and output handling |
| tests/templates/test_utag_clustering_template.py | Unit tests covering workflow validation, error handling, and parameter conversion |
Comments suppressed due to low confidence (1)
src/spac/templates/utag_clustering_template.py:67
- The parameter name 'Parellel_Processes' has a spelling error. It should be 'Parallel_Processes' (with one 'l').
Parallel_processes = params.get("Parellel_Processes", False)
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… tests