feat(analysis_to_csv_template): add analysis_to_csv_template function…#380
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fangliu117 merged 1 commit intodevfrom Aug 3, 2025
Merged
feat(analysis_to_csv_template): add analysis_to_csv_template function…#380fangliu117 merged 1 commit intodevfrom
fangliu117 merged 1 commit intodevfrom
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Pull Request Overview
Adds a new analysis_to_csv_template function that converts AnnData objects to CSV format with associated unit tests. This template replicates NIDAP functionality for exporting single-cell analysis data.
- Implements
analysis_to_csv_template.pywithrun_from_jsonfunction for converting AnnData to CSV - Adds comprehensive unit tests covering I/O workflows, error validation, and function calls
- Supports exporting original data matrix or specific layers with observation metadata and spatial coordinates
Reviewed Changes
Copilot reviewed 2 out of 2 changed files in this pull request and generated 4 comments.
| File | Description |
|---|---|
| src/spac/templates/analysis_to_csv_template.py | Main template implementation with JSON parameter parsing and AnnData to CSV conversion |
| tests/templates/test_analysis_to_csv_template.py | Unit tests covering complete I/O workflows, error handling, and function validation |
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… and unit tests