feat(spatial_interaction_template): add spatial_interaction_template …#383
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fangliu117 merged 2 commits intodevfrom Aug 4, 2025
Merged
feat(spatial_interaction_template): add spatial_interaction_template …#383fangliu117 merged 2 commits intodevfrom
fangliu117 merged 2 commits intodevfrom
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Pull Request Overview
This PR introduces a new spatial interaction template for analyzing spatial relationships between cell types in single-cell data, along with comprehensive unit tests. The implementation maintains the exact logic from the original NIDAP template while making it platform-agnostic.
- Adds
spatial_interaction_template.pywith functions for neighborhood enrichment and cluster interaction matrix analysis - Implements comprehensive unit tests covering I/O workflows, error validation, and function calls
- Provides CLI interface and proper parameter validation for spatial analysis methods
Reviewed Changes
Copilot reviewed 2 out of 2 changed files in this pull request and generated 2 comments.
| File | Description |
|---|---|
src/spac/templates/spatial_interaction_template.py |
Main template implementing spatial interaction analysis with NIDAP-compatible logic and parameter handling |
tests/templates/test_spatial_interaction_template.py |
Unit tests covering complete workflows, error cases, and function call verification with mocked dependencies |
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…and unit tests