feat(subset_analysis_template): add subset_analysis_template function…#395
Merged
fangliu117 merged 2 commits intodevfrom Aug 4, 2025
Merged
feat(subset_analysis_template): add subset_analysis_template function…#395fangliu117 merged 2 commits intodevfrom
fangliu117 merged 2 commits intodevfrom
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Pull Request Overview
Adds a new subset analysis template function that allows filtering of AnnData objects based on specific cell annotations. This feature enables users to include or exclude cells with specific labels from their analysis datasets.
Key changes:
- New
subset_analysis_template.pymodule withrun_from_jsonfunction for subset analysis - Comprehensive unit tests covering I/O workflows, parameter validation, and function mocking
- Support for both file-based and in-memory workflows with configurable save behavior
Reviewed Changes
Copilot reviewed 2 out of 2 changed files in this pull request and generated 3 comments.
| File | Description |
|---|---|
| src/spac/templates/subset_analysis_template.py | Main implementation of subset analysis functionality with JSON parameter parsing and AnnData filtering |
| tests/templates/test_subset_analysis_template.py | Unit tests covering complete workflow, error handling, and function call verification |
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… and unit tests