feat: Add SPAC boxplot Galaxy tool for Docker deployment#400
Merged
fangliu117 merged 1 commit intodevfrom Oct 1, 2025
Merged
Conversation
Contributor
There was a problem hiding this comment.
Pull Request Overview
This PR adds a SPAC boxplot Galaxy tool configured for Docker deployment. The tool enables users to create boxplot visualizations of features in analysis datasets through the Galaxy interface.
Key changes:
- New Galaxy tool XML configuration for SPAC boxplot functionality
- Docker wrapper script for executing SPAC templates in containerized environment
- Documentation for Galaxy tool installation and Docker requirements
Reviewed Changes
Copilot reviewed 3 out of 5 changed files in this pull request and generated 1 comment.
| File | Description |
|---|---|
| galaxy_tools/spac_boxplot/spac_boxplot.xml | Galaxy tool XML definition with parameters, inputs, outputs and Docker container configuration |
| galaxy_tools/spac_boxplot/run_spac_template.sh | Shell script wrapper that executes SPAC templates inside Docker container with parameter processing |
| galaxy_tools/README.md | Installation documentation for Galaxy tools with Docker requirements |
Tip: Customize your code reviews with copilot-instructions.md. Create the file or learn how to get started.
| ## Requirements | ||
| - Galaxy instance with Docker enabled | ||
| - Docker image: nciccbr/spac:v1 | ||
|
|
There was a problem hiding this comment.
The XML code block is not properly closed. Add a closing triple backtick (```) after the tool configuration line.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
SPAC boxplot Galaxy tool configured for Docker deployment. The tool uses the nciccbr/spac:v1 container from Docker Hub.