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TFdisc

PyPI - Python Version PyPI - Wheel


TFdisc is a python library for Transcription factor perturbation simulation. TFdisc uses wild-type single-cell RNA sequencing (scRNA-seq) data to emulate corresponding scRNA-seq transcriptomes post-TF perturbations.TFdisc generates inferred transcriptomes for individual cells with single or multiple TFs perturbed. This simulated perturbed single-cell expression data mirrors actual experimental results, facilitating a wide range of downstream analyses.

Installation

pip install TFdisc

The tutorial for TFdisc

please refer to the Tutorial and full documentation for TFdisc is available on Read the Docs

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For questions and help requests, you can reach out to WHY by email. If you found a bug, please use the issue tracker.

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  • Python 79.5%
  • Jupyter Notebook 20.5%