Bismark Rust suite 2.0.0

What's Changed

• merging dev for new release by @FelixKrueger in #629
• Update deduplication.md by @josefoviedo in #665
• fix: correct possessive usage in README by @VerisimilitudeX in #724
• merging in dev for new release by @FelixKrueger in #759
• Dev by @FelixKrueger in #760
• chore(noodles-io): pin BismarkStrand layout with #[repr(u8)] by @FelixKrueger in #816
• ci/chore: master infra — register release workflow + Linguist language-bar fix by @FelixKrueger in #952
• docs: announce Perl maintenance freeze; redirect new work to the Rust suite by @FelixKrueger in #1008
• test(aligner): real Trim Galore uBAM byte-identity regression fixtures (#1025) by @FelixKrueger in #1033
• feat(aligner): Illumina 5-Base (5mC→T) support — SE + PE, concordance-gated (#787) by @BenjaminDEMAILLE in #1015
• docs(aligner): clarify 5-Base flag help + README journal (#1035, #787) by @FelixKrueger in #1036
• chore(release): GA 2.0.0 version bump + crates.io publishability (GA epic Ph2) by @FelixKrueger in #1037
• refactor(release): rename _rs binaries → canonical names (GA epic Ph3a) by @FelixKrueger in #1038
• docs(rust): legacy Perl Bismark v0.25.1 install note by @FelixKrueger in #1040
• chore(release): GA 2.0.0 release-pipeline rework + crates.io publish job (GA epic Ph4a) by @FelixKrueger in #1041
• refactor(5base): make Illumina 5-Base paired-end only (#787) by @BenjaminDEMAILLE in #1042
• GA 2.0.0 takeover: merge rust/iron-chancellor → master (Ph4b) by @FelixKrueger in #1044
• fix(release): workspace-dry-run publish validation + vendor report/summary assets (GA Ph4c) by @FelixKrueger in #1047
• chore(release): Ph5 pre-flight — token-based crates.io publish + vendor meta/report/summary assets by @FelixKrueger in #1048
• ci: on-demand :ga-candidate image build (pre-Ph5 methylseq validation) by @FelixKrueger in #1049
• refactor(suite): uniform --version + per-tool "Last modified" --help footer (pre-Ph5) by @FelixKrueger in #1050
• fix(release): resumable + 429-backoff crates.io publish (GA cut recovery) by @FelixKrueger in #1051

New Contributors

• @josefoviedo made their first contribution in #665
• @VerisimilitudeX made their first contribution in #724

Full Changelog: bismark-rust-v2.0.0-beta.13...bismark-rust-v2.0.0