fix(ci): avoid workspace: protocol error in publish-agentflow workflow

[jocelynlin-wd]

Fix an issue in a test run https://github.com/FlowiseAI/Flowise/actions/runs/22929422859/job/66547466870

Summary

• Use working-directory: packages/agentflow with plain npm version instead of pnpm --filter exec npm version, which exposed npm to pnpm's workspace: protocol and caused EUNSUPPORTEDPROTOCOL errors
• Use pnpm pack instead of pnpm exec npm pack for the same reason
• Sort dependencies and peerDependencies alphabetically in packages/agentflow/package.json to prevent future diff noise from npm tooling

Test plan

• Run the publish workflow with bump=prerelease and tag=dev and verify the "Set version" step succeeds
• Verify the dry-run publish completes without errors

Test dry-run with updated script: https://github.com/FlowiseAI/Flowise/actions/runs/22932158208/job/66555843045 (the job is rejected manually to avoid publishing to npm)

🤖 Generated with Claude Code

[gemini-code-assist]

Summary of Changes

Hello, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request resolves critical CI issues within the publish-agentflow workflow that were preventing successful package publishing due to workspace: protocol errors. The changes streamline the package management commands and improve consistency in dependency declarations, ensuring a more robust and predictable build process.

Highlights

• CI Workflow Fix: Addressed EUNSUPPORTEDPROTOCOL errors in the publish-agentflow workflow by modifying how npm version and npm pack commands are executed. The workflow now uses working-directory: packages/agentflow with plain npm version and pnpm pack directly, avoiding pnpm --filter exec which exposed npm to pnpm's workspace: protocol.
• Dependency Sorting: Alphabetically sorted dependencies and peerDependencies in packages/agentflow/package.json to reduce future diff noise caused by inconsistent ordering from npm tooling.

Changelog

• packages/agentflow/package.json
  • Sorted peerDependencies alphabetically
  • Sorted dependencies alphabetically

Ignored Files

• Ignored by pattern: .github/workflows/** (1)
  • .github/workflows/publish-agentflow.yml

Activity

• The author, jocelynlin-wd, has outlined a test plan to verify the fix by running the publish workflow with bump=prerelease and tag=dev and checking for successful version setting and error-free dry-run publishes.
• The pull request was generated with Claude Code.

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[gemini-code-assist]

Code Review

This pull request addresses a CI issue related to the workspace: protocol in pnpm. The provided change sorts the dependencies and peerDependencies in packages/agentflow/package.json alphabetically. This is a good housekeeping measure that improves maintainability and helps avoid future diff noise. The change is correct and I have no further comments.

_{Note: Security Review has been skipped due to the limited scope of the PR.}