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ProTeX guidelines

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Matthew Thompson edited this page Sep 26, 2025 · 4 revisions

The ProTeX best practices document can be accessed here:

Category:SI Team

Wiki pages Pages 374

Home
Adding a Baselibs Component
Adding a Git Baselibs Component
AGCM Structure
BUFR files
Building Baselibs
Building CVS Baselibs
Building ESMF with NETCDF and compiling GEOS 5
Building Git Baselibs
Building Spack Baselibs
Building topography files for GEOS 5 with the NCAR Topography Tool
C program to read data from downloaded file
Checking Out and Running a One Day Run
Cloning a Git Bridge Repo
Configuration for GEOS 5.12 Nature Run Non hydrostatic 7km
Converting a binary restart to NetCDF so you can regrid
Converting GEOS code from SLES 11 to SLES 12
Created by parsing source code for child component names
Creating the GEOSagcm bridge repo
Cubed Sphere Data Access Guide
CVS Best Practices
DAS Quickstart
Data access guide
Debugging Ganymed 1.0
Debugging the GEOS 5 GCM
Discover Dali Dirac Tidbits and Notes
Documentation for GEOS GCM v10
Documenting GEOS 5 Gridded Components
ESMA Git Policy
F25p6 staets sorted by component name
F25p6 states sorted by component name
F25p6 states sorted by short name
File talkF10 correction.jpg
File talkSfcpress type 2015071200z.png
Fortran
Fortuna 2.0 Users Guide
Fortuna 2.1 Quick Start
Fortuna 2.2 Quick Start
Fortuna 2.3 Quick Start
Fortuna 2.4 Quick Start
Fortuna 2.4 Single Column Model
Fortuna 2.4 Users Guide
Fortuna 2.5 Quick Start
Fortuna 2.5 Single Column Model
Fortuna 2.5 Users Guide
G21 states sorted by component name
G21 states sorted by short name
G21p3 states sorted by component name
G21p3 states sorted by short name
G5NR Data Access Guide
G5NR data access using C
G5NR data access using Fortran
Ganymed 1.0 Quick Start
Ganymed 1.0 Single Column Model
Ganymed 1.0 Users Guide
Ganymed 2.0 Quick Start
Ganymed 2.1 Quick Start
Ganymed 3.0 Quick Start
Ganymed 3.0 Users Guide
Ganymed 4.0 Quick Start
Ganymed 4.0 Single Column Model
Ganymed 4.0 states sorted by component name
Ganymed 4.0 states sorted by short name
Ganymed 4.0 Users Guide
Ganymed 4.1 Boundary Conditions
Ganymed 4.1 Quick Start
Ganymed 4.1 Users Guide
GEOS 5 4DVAR capable GSI Tutorial
GEOS 5 ADAS Radiance Monitoring
GEOS 5 Aerosol Observations AeroObs
GEOS 5 AGCM Overview
GEOS 5 Boundary Conditions
GEOS 5 Brown Bag Seminars
GEOS 5 Checkout and Build Instructions
GEOS 5 Checkout and Build Instructions Fortuna
GEOS 5 Checkout and Build Instructions Heracles
GEOS 5 Checkout and Build Instructions pre Fortuna
GEOS 5 Configuration for AR5
GEOS 5 Configuration for PIESA
GEOS 5 Data Products
GEOS 5 Design Documents
GEOS 5 Documentation for Fortuna 2.0
GEOS 5 Documentation for Fortuna 2.1
GEOS 5 Documentation for Fortuna 2.2
GEOS 5 Documentation for Fortuna 2.3
GEOS 5 Documentation for Fortuna 2.4
GEOS 5 Documentation for Fortuna 2.5
GEOS 5 Documentation for Ganymed 1.0
GEOS 5 Documentation for Ganymed 2.0
GEOS 5 Documentation for Ganymed 2.1
GEOS 5 Documentation for Ganymed 3.0
GEOS 5 Documentation for Ganymed 4.0
GEOS 5 Documentation for Ganymed 4.1
GEOS 5 Documentation for Heracles 4.0
GEOS 5 Documentation for Heracles 4.3
GEOS 5 Documentation for Heracles 5.1
GEOS 5 Documentation for Heracles 5.2
GEOS 5 Documentation for Heracles 5.3
GEOS 5 Documentation for Heracles 5.4
GEOS 5 Documentation for Icarus 1.0
GEOS 5 Documentation for Icarus 2.0
GEOS 5 Documentation for Icarus 3.0
GEOS 5 Documentation for Icarus 3.1
GEOS 5 Documentation for Icarus 3.2
GEOS 5 Documentation for Icarus 3.3
GEOS 5 Documentation for Icarus 3.4
GEOS 5 Documentation for Jason 1.1
GEOS 5 Documentation for Jason 2.2
GEOS 5 Documentation for Jason 3.0
GEOS 5 Earth System Modeling and Data Assimilation
GEOS 5 GMI Configuration for PIESA
GEOS 5 GrADS Data Server GDS
GEOS 5 Modal Aerosol Model MAM
GEOS 5 ODS file contents
GEOS 5 Prototype 4DVAR Implementation Overview
GEOS 5 public AGCM Documentation
GEOS 5 public AGCM Documentation and Access
GEOS 5 Quick Start
GEOS 5 Run Time Characteristics
GEOS 5 Run Time Characteristics for Heracles 5.2
GEOS 5 Software Engineering
GEOS 5 System Overview
GEOS 5 System Overview 2
GEOS 5 Timings
GEOS 5 Users and Developers Guide
GEOS 5 Users and Developers Guides
GEOS ADAS Radiance Monitoring
GEOS GCM Documentation and Access
GEOS GCM Quick Start
GEOS GCM Single Column Model
GEOS Git Transition
GEOS Prototype 4DVAR Implementation Overview
GEOS Structure Diagrams
GEOS Users and Developers Guides
Git sparsetree modules
Git tags from CVS
Git transition assignments
GMAO Software Infrastructure
GridComps in GEOS 5
Gridded Components in GEOS 5
Gridded Components in GEOS 5 AGCM
Heracles 4.0 Boundary Conditions
Heracles 4.0 Quick Start
Heracles 4.0 Single Column Model
Heracles 4.0 states sorted by component name
Heracles 4.0 states sorted by short name
Heracles 4.0 Users Guide
Heracles 4.3 Quick Start
Heracles 4.3 Users Guide
Heracles 5.1 Quick Start
Heracles 5.1 Users Guide
Heracles 5.2 Quick Start
Heracles 5.2 states sorted by component name
Heracles 5.2 states sorted by short name
Heracles 5.2 Users Guide
Heracles 5.3 Quick Start
Heracles 5.3 states sorted by component name
Heracles 5.3 states sorted by short name
Heracles 5.3 Users Guide
Heracles 5.4 AGCM Structure
Heracles 5.4 OGCM Structure
Heracles 5.4 Quick Start
Heracles 5.4 states sorted by component name
Heracles 5.4 states sorted by short name
Heracles 5.4 Users Guide
Heracles Single Column Model
History Control
Icarus 1.0 AGCM Structure
Icarus 1.0 OGCM Structure
Icarus 1.0 Quick Start
Icarus 1.0 states sorted by component name
Icarus 1.0 states sorted by short name
Icarus 1.0 Users Guide
Icarus 2.0 Quick Start
Icarus 2.0 states sorted by component name
Icarus 2.0 states sorted by short name
Icarus 2.0 Users Guide
Icarus 3.0 Quick Start
Icarus 3.0 states sorted by component name
Icarus 3.0 states sorted by short name
Icarus 3.0 Users Guide
Icarus 3.1 Quick Start
Icarus 3.1 states sorted by component name
Icarus 3.1 states sorted by short name
Icarus 3.1 Users Guide
Icarus 3.2 AGCM Structure
Icarus 3.2 OGCM Structure
Icarus 3.2 Quick Start
Icarus 3.2 states sorted by component name
Icarus 3.2 states sorted by short name
Icarus 3.2 Users Guide
Icarus 3.3 AGCM Structure
Icarus 3.3 OGCM Structure
Icarus 3.3 Quick Start
Icarus 3.3 states sorted by component name
Icarus 3.3 states sorted by short name
Icarus 3.3 Users Guide
Icarus 3.4 AGCM Structure
Icarus 3.4 OGCM Structure
Icarus 3.4 Quick Start
Icarus 3.4 states sorted by component name
Icarus 3.4 states sorted by short name
Icarus 3.4 Users Guide
Icarus Single Column Model
Instructions for simulating a DAS forecast run
Jason 1.1 AGCM Structure
Jason 1.1 OGCM Structure
Jason 1.1 Quick Start
Jason 1.1 states sorted by component name
Jason 1.1 states sorted by short name
Jason 1.1 Users Guide
Jason 2.2 AGCM Structure
Jason 2.2 OGCM Structure
Jason 2.2 Quick Start
Jason 2.2 states sorted by component name
Jason 2.2 states sorted by short name
Jason 2.2 Users Guide
Jason 3.0 AGCM Structure
Jason 3.0 OGCM Structure
Jason 3.0 Quick Start
Jason 3.0 states sorted by component name
Jason 3.0 states sorted by short name
Jason 3.0 Users Guide
Jason Single Column Model
List of Export Import Internal states in GEOS 5
List of Export Import Internal states in GEOS 5 AGCM
MAPL software
Merging AGCM and DAS Tags
Merging and Updating the SVN Repository
Merging and Updating the SVN Repository For Fortuna
Merging and Updating the SVN Repository For Heracles
Merging and Updating the SVN Repository For Icarus
Merging and Updating the SVN Repository From Fortuna to Ganymed
Merging and Updating the SVN Repository From Ganymed 1 0 p4 To Ganymed 1 0 p4 FV3GPU
Merging and Updating the SVN Repository From Ganymed 1 0 p4 To Ganymed 1 0 p5
Merging and Updating the SVN Repository From Ganymed 1 0 p5 To Ganymed 1 0 p5 FV3GPU
Merging and Updating the SVN Repository From Ganymed 2 1 p6 to Ganymed 3 0 p1
Merging and Updating the SVN Repository From Ganymed 3 0 p1 to Ganymed 4 0
MERRA2 Data Lessons for next REANL
MERRA2 InputData
MERRA2 Preparations
ModuleArguments
ModuleCategory handler
ModuleDocumentation
ModuleDocumentation config
ModuleHtmlBuilder
ModuleMessage box
ModuleMessage box configuration
ModuleNamespace detect
ModuleNamespace detect config
ModuleNamespace detect data
ModuleYesno
My Random Scribblings
New MAPL Features and Desktop Model
OGCM Structure
Overview
Preliminary Integrated Earth System Analysis PIESA
ProTeX guidelines
Publications
Python Interface to MAPL
RadApp
Radiance Bias correction
Radiance Bias correction in ODS files
Recipe C program to read data from downloaded file
Recipe cube lat laon
Recipe environment
Recipe File naming conventions
Recipe Format and file organization
Recipe Fortran program as OPeNDAP client
Recipe Fortran program to read data from downloaded file
Recipe Fortran program to read downloaded files
Recipe Fortran program to read global data from downloaded file
Recipe IDL program as OPeNDAP client
Recipe IDL program to convert cubed sphere data to lat lon data
Recipe IDL program to read cubed sphere data
Recipe IDL program to read data from downloaded file
Recipe Matlab program as OPeNDAP client
Recipe Matlab program converts cubed sphere to latlon
Recipe Matlab program driver for visualization
Recipe Matlab program fills the seam
Recipe Matlab program fills the seam3
Recipe Matlab program fills the seam4
Recipe Matlab program fills the seam6
Recipe Matlab program to read data from downloaded file
Recipe pbs script
Recipe Python program as OPeNDAP client
Recipe python program example1
Recipe python program example2
Recipe python program reads cubed sphere data
Recipe Python program to read data from downloaded file
Recipe R program as OPeNDAP client
Recipe Read file metadata
Recipe README
Recipe Retrieve data global subset using download tool
Recipe Retrieve data subsets using download tool
Recipe Retrieve data subsetting re formatting using download tool
Recipe Retrieve global data from FTP server
Recipe Retrieve global data from HTTP server
Recipe Retrieve global data from HTTPS server
Recipe Visualize downloaded data using Panoply
Recipe Visualize OPeNDAP data using Panoply
Recipe winds
Regression tests
Regridding for the new Landice Component
Regridding from Ganymed 3 0 p1 UNSTABLE to Ganymed 4 0 UNSTABLE
Regridding Ganymed 1.0 from MERRA
Regridding restarts for Fortuna 2.0
Regridding restarts for Fortuna 2.1
Regridding restarts for Fortuna 2.2
Regridding Restarts for Fortuna 2.4
Regridding Restarts for Fortuna 2.5
Regridding Restarts for Ganymed 1.0
Regridding Restarts for GEOS GCM
Regridding Restarts for Heracles 5.1
Regridding Restarts for Heracles 5.3
Regridding Restarts for Heracles 5.4
Regridding Restarts for Icarus 1.0
Regridding Restarts for Icarus 2.0
Regridding Restarts for Icarus 3.0
Regridding Restarts for Icarus 3.1
Regridding Restarts for Icarus 3.2
Regridding Restarts for Icarus 3.3
Regridding Restarts for Icarus 3.4
Regridding Restarts for Jason 1.1
Regridding Restarts for Jason 2.2
Regridding Restarts for Jason 3.0
Regridding with ESMF and the stand alone utility
Run GEOS 5 on NCCS Haswells
Running a Suite of Forecasts
Running ADAS
Running Coupled Ocean
Running Doubly Periodic Experiment
Running GEOS 5 on a GMAO Desktop
Running the GEOS 5 SBU Benchmark
Setting up Environment for AGCM Sandbox
Setting up S2Sv3 model
Setting Up the Fortuna 2.0 Single Column Model
Setting Up the Fortuna 2.1 Single Column Model
Setting Up the Fortuna 2.2 Single Column Model
Setting up to create an experiment page on GMAO Intranet
Sorted by component name
Sorted by short name
Sorted by shorted name
TalkDAS Quickstart
TalkGEOS 5 ADAS Radiance Monitoring
TalkGEOS 5 Earth System Modeling and Data Assimilation
TalkInstructions for simulating a DAS forecast run
TalkRunning ADAS
The AGCM Gridded Component
The Longwave Gridded Component
The Physics Gridded Component
The Surface Gridded Component
Totalview and DDT
Transition to ESMF 5
Updating a Baselibs Component
Updating a Git Baselibs Component
Updating Mediawiki Installation
Useful Tools
User talkMohar.chattopadhyay
User talkMsienkie
Users and Developers Guide for Fortuna 2.3
Users and Developers Guide for Fortuna 2.4
Using ESMPy on Discover
Using svn with the trac Repository
Using the c2l CFIO offline.x program
Using the datatank
Using the ESMF regridding tools
Using the ExtData component
Using the ExtData History tool
Using the MAPL Orbital Component with SatSim
Using the RadApp tool
Visualizing data in Cubed Sphere grid
Workflow meeting
Working with BUFR

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