v2.4.0

Features

• --gff3 writes each coding transcript with its domains as children (b4596c7)

Other Changes

• JBrowse's tutorial runs domains2genome with npx; the CLI command is gone (92bb7c7)
• A mistyped flag, an unwritable --out or a missing .gz input prints one Error line (48add69)
• An ID as written beats another transcript's ID with its version dropped (968bde2)
• Preversion builds before it tests, as CI does (4b765bd)

Full changelog: v2.3.0...v2.4.0

v2.3.0

Other Changes

• Read GFF3 through gff-nostream, the parser JBrowse reads gene tracks with (68fef57)

Full changelog: v2.2.0...v2.3.0

v2.2.0

Other Changes

• The transcript column is the Name a gene track labels the transcript with (1981070)
• A bare % stays as written, and a Name another transcript writes as its ID falls back (daa46b1)

Full changelog: v2.1.0...v2.2.0

v2.1.0

Other Changes

• A --source matching no call names the sources the calls come from (b372efa)
• Supports Node 18.3, where parseArgs arrived, as @jbrowse/cli does (718e305)

Full changelog: v2.0.2...v2.1.0

v2.0.2

Other Changes

• README runs InterProScan 6 for GFF3, whose names label a gene track (4e88e84)

Full changelog: v2.0.1...v2.0.2

v2.0.1

Other Changes

• Update dependencies to latest (4fe0611)
• Rows that start together sort by the whole line (7ffa213)
• README walks from a genome to its domains through InterProScan or hmmscan (3848939)

Full changelog: v2.0.0...v2.0.1

v2.0.0

Other Changes

• Place InterProScan and HMMER calls as BED12, shared with jbrowse make-protein-features (4ea9a98)
• Rename to domains2genome (1d52fe7)
• Point the repository links at GMOD/domains2genome (40a9dbd)

Full changelog: v1.0.3...v2.0.0