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ISOFIT SMCE PCluster

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Shawn P. Serbin edited this page Apr 20, 2026 · 10 revisions

Install directory /shared-ebs/software/isofit

module load singularity/4.3.4

singularity build --sandbox isofit_v3.7.5 docker://serbinsh/isofit_smce:multiarch_v3.7.5

singularity build --sandbox isofit_v3.7.5 isofit_v3.7.5.sif



singularity build isofit_v3.7.5.sif docker://serbinsh/isofit_smce:multiarch_v3.7.5

singularity shell --no-home --writable-tmpfs /shared-ebs/software/isofit/isofit_v3.7.5.sif

singularity exec --no-home --writable-tmpfs /shared-ebs/software/isofit/isofit_v3.7.5.sif /bin/bash

singularity run --no-home --writable-tmpfs /shared-ebs/software/isofit/isofit_v3.7.5.sif isofit --version



Setting up ISOFIT for use with Singularity singularity run --no-home --writable-tmpfs /shared-ebs/software/isofit/isofit_v3.7.5.sif isofit download --help

singularity run --no-home --writable-tmpfs --bind /shared-ebs/software/isofit/isofit_home:/home/mambauser/.isofit
--bind /shared-ebs/software/isofit/isofit_data:/isofit_data /shared-ebs/software/isofit/isofit_v3.7.5.sif
isofit -b /isofit_data download essentials

singularity run --no-home --writable-tmpfs --containall --bind /shared-ebs/software/isofit/isofit_home:/home/mambauser/.isofit
--bind /shared-ebs/software/isofit/isofit_data:/isofit_data /shared-ebs/software/isofit/isofit_v3.7.5.sif
isofit -b /isofit_data download all

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