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Information Theory Module#63

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skim0119 merged 14 commits intoGazzolaLab:update-0.1.1from
Gauravu2:info_theory
Jun 28, 2022
Merged

Information Theory Module#63
skim0119 merged 14 commits intoGazzolaLab:update-0.1.1from
Gauravu2:info_theory

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@Gauravu2 Gauravu2 commented Jun 26, 2022

The new module has functions to estimate information theory parameters. A function to quickly make binned spike trains is also added. resolve #58

Remaining Work :

  • Documentation and references
  • Example guide

@Gauravu2 Gauravu2 added the enhancement New feature or request label Jun 26, 2022
@Gauravu2 Gauravu2 added this to the Version 0.2 milestone Jun 26, 2022
@Gauravu2 Gauravu2 requested a review from skim0119 June 26, 2022 20:50
@Gauravu2 Gauravu2 self-assigned this Jun 26, 2022
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codecov-commenter commented Jun 27, 2022

Codecov Report

Merging #63 (f2e5be3) into update-0.1.1 (bf95d89) will decrease coverage by 0.17%.
The diff coverage is 38.98%.

@@               Coverage Diff                @@
##           update-0.1.1      #63      +/-   ##
================================================
- Coverage         41.75%   41.57%   -0.18%     
================================================
  Files                28       29       +1     
  Lines               855      914      +59     
  Branches             95       95              
================================================
+ Hits                357      380      +23     
- Misses              493      529      +36     
  Partials              5        5              
Flag Coverage Δ
unittests 41.57% <38.98%> (-0.18%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
miv/statistics/burst.py 65.85% <ø> (ø)
miv/statistics/spiketrain_statistics.py 72.72% <12.50%> (-19.28%) ⬇️
miv/statistics/info_theory.py 42.00% <42.00%> (ø)
miv/statistics/__init__.py 100.00% <100.00%> (ø)

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@skim0119 I have updated the documentation for information theory module. I'll put visualization in a separate pull request as it still need some work and is not limited to info theory module.

@Gauravu2 Gauravu2 changed the title [WIP] Information Theory Module Information Theory Module Jun 28, 2022
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LGTM

@skim0119 skim0119 merged commit 45b93bd into GazzolaLab:update-0.1.1 Jun 28, 2022
@skim0119 skim0119 linked an issue Jun 28, 2022 that may be closed by this pull request
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Connectivity: cross-entropy and directed information

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