Refactor attributions #8
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jkanche
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May 14, 2025
jkanche
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May 20, 2025
avantikalal
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Jun 18, 2025
* setting up the folder structure * move scripts to cli and setting up package meta for cli access * restructure the rest of the files * Refactor attributions (#8) * attribution refactoring low level api design * updates of api of attirbutions and cli * attribution cli * wandb login, resources -> hub, and depreated tools.interpret * update for multiple genes * cli update to support multiple genes and attribution methods * testcase fix * test ci fix * genome --------- Co-authored-by: Muhammed Hasan Celik <muhammedhasancelik@gmail.com> * vep added * vep implemented * vep logs and api update * decima vep bug fix * bug fix * tangermeme version * ci * attr window bug * fix of typo and depreceated * mutate function deleted and fix of string literal * Refactor vep (#9) * vep added * vep implemented * vep logs and api update * decima vep bug fix * bug fix * tangermeme version * ci * attr window bug * fix of typo and depreceated * mutate function deleted and fix of string literal --------- Co-authored-by: Muhammed Hasan Celik <celik.muhammed_hasan@gene.com> * pr code review --------- Co-authored-by: Muhammed Hasan Celik <muhammedhasancelik@gmail.com> Co-authored-by: Muhammed Hasan Celik <celik.muhammed_hasan@gene.com>
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