Prevent padded intervals from exceeding chromosome ends #95
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In
LabeledSeqDataset, we add padding at the end of intervals to load extra bases for data augmentation by shift/jittering. Similarly inVariantDataset, we generate intervals surrounding the variant. In both these cases, the extended/generated intervals may end up extending beyond the chromosome which will result in an error when we try to read sequences.This PR introduces the following changes:
check_chrom_endswhich raises an error if any intervals exceed the chromosome ends, and prints the relevant intervals.Addresses #54