v0.3.0

v0.3.0 (2023-10-13)

Feature

• feat: change to classmethods for Annotations and GODag (#14)

• feat: add classmethod to
  Annotations and add set operations

• feat: add classmethod to GODag, tests to pytest

• fix: use new classmethods in example

• fix: test_reverse_lookup wrong p (6e17860)

v0.2.1

v0.2.1 (2023-10-01)

Fix

• fix: add greater alternative to fisher (#13)

• fix: fisher greater alternative

• fix: only preform pvalcalc if study_count>0 (67a785b)

v0.2.0

v0.2.0 (2023-09-22)

Feature

• feat: add ortholog and convert id (#12)

• from object oriented to functional for some

• fix: typing

• feat: add gOrth orthologand base ortholog class

• intermittent ortholog commit

• feat: add ortholog and convert_id (1bbb598)

Unknown

• Revert "Add ortholog and convert_id (#10)" (#11)

This reverts commit 622dd42. (7b99401)

• Add ortholog and convert_id (#10)

• from object oriented to functional for some

• fix: typing

• feat: add gOrth orthologand base ortholog class

• intermittent ortholog commit

• feat: add ortholog and convert_id (622dd42)

v0.1.2

v0.1.2 (2023-09-19)

Fix

• fix: cd test install package name (d5be5ff)

Unknown

• [no_ci] change example comments (0359530)

• Update README.md (8574810)

• Add examples, feat: match_annotataions_to_godag (#9), add coverage to ci

• add cancer/inflammation example

• feat: add match_annotations_to_godag

• fix: add test_match_annotations_to_godag

• lint

• fix: filepath in example

• lint

• fix check_manifest ignore

• split optional dependancies

• add diff coverage

• fix: missing install diff-cover

• addd pytest sugar and pytest cov

• fix: env for pytest in ci

• fix: coverage now works

• add coveralls

• add coverage badge (1d03d4b)

• split create release and deploy (#8) (73f067a)

v0.1.1

v0.1.1 (2023-09-19)

Fix

• fix: from ci remove on push: main (#6) (0779372)

Unknown

• reverse to pat, add check for semantic-release (#7) (61d55cd)

• separate ci cd and fix semantic-version-release (#5)

• merge ci-cd

• add isort, remove mypy

• add semantic versioning

• lint

• bug: remove editorconfig

• bug: remove editorconfig

• add build to cd

• add admin token

• fix: python-semantic-release (573c7a7)

v0.1.0

v0.1.0 (2023-09-18)

Feature

• feat: results intersection (200f3a8)

Fix

• fix: ci naming (0daea9e)

Unknown

• add admin token (#4)

• merge ci-cd

• add isort, remove mypy

• add semantic versioning

• lint

• bug: remove editorconfig

• bug: remove editorconfig

• add build to cd

• add admin token (d9669cc)

• add deploy to cd (#3)

• merge ci-cd

• add isort, remove mypy

• add semantic versioning

• lint

• bug: remove editorconfig

• bug: remove editorconfig

• add build to cd (2e1010f)

• Merge branch 'main' of https://github.com/MediWizards/revonto (6cc8511)

• remove editorconfig (#2)

• merge ci-cd

• add isort, remove mypy

• add semantic versioning

• lint

• bug: remove editorconfig

• bug: remove editorconfig (8651263)

• merge ci-cd (#1)

• merge ci-cd

• add isort, remove mypy

• add semantic versioning

• lint (bf26bb6)

• add multiple testing (94efabc)

• change annotations from dict to set (fe22733)

• remove version from init (98b9ab0)

• less strict mypy ci (bba2d6b)

• formatting, linting (2923e4b)

• annotations shape, custom dict, set operations (7fb8021)

• update ci-cd (88490f3)

• reverse lookup study (68e68d4)

• add function to associations, change to goterm key (375c671)

• add associations (4ca02d0)

• cleanup and more some multiple test code (e83ae4c)

• add pval calc (f65654a)

• add associations framework (dc5c8d6)

• update readme (cf4023a)

• update github actions matrix (63e2694)

• fix min python version 3.9 (c82448e)

• min python version is 3.9 (1ee7077)

• typehints (c0d0e9d)

• obo parser (ontology.py) (46c5f19)

• create files, .toml (d7a6a91)

• change to revonto (265037e)

• remove python 3.6 (c00766e)

• change to GPLv3 (20bd28d)

• Initial commit (7cf74eb)