docs: fill in remaining holes in docs #70
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Done |
korikuzma
requested changes
Jan 23, 2026
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| At present, AnyVLM serves `Cohort Allele Frequency (CAF) <https://va-spec.ga4gh.org/en/1.0/va-standard-profiles/base-profiles/study-result-profiles.html#cohort-allele-frequency-study-result>`_ objects, describing the frequency of an allele in a cohort. CAF objects may also report additional data, including frequency broken down by zygosity and quality control filters declared by the original variant calls. | ||
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| .. figure:: /_static/img/caf.png |
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Should we reference https://gnomad.broadinstitute.org/news/2023-11-ga4gh-gks/ ?
| This version of AnyVLM validates data using the following data standards: | ||
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| .. list-table:: |
Co-authored-by: Kori Kuzma <korikuzma@gmail.com>
Co-authored-by: Kori Kuzma <korikuzma@gmail.com>
Co-authored-by: Kori Kuzma <korikuzma@gmail.com>
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Tweaked a few things + added some more config descriptions. I am not totally confident about my description of the VLM service info values |
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close #25
stable/AnyVar docs. These don't exist yet because we haven't made a stable release. I think we probably should, but I'd rather just do dead links that become active instead of incorrect links that I forget to updateViewable here: https://anyvlm--70.org.readthedocs.build/en/70/
@korikuzma to add github changelog API token as env var where needed if it's not already there (✅ )