Skip to content

v1.7.4

Choose a tag to compare

@edg1983 edg1983 released this 29 Jun 13:08
· 109 commits to main since this release

This is the first version ready for public release.

The pipeline can perform GWAS and rare variant analysis at a large scale using regenie and massive parallelization. All major data format are accepted (been, bed, pgen, vcf) and multiple models can be tested automatically starting from a models definition table and a phenotypes table.

Results will include full summary stats, top hits (SNPs annotated with overlapping genes for GWAS or genes), and clumped loci annotated with overlapping and nearby genes (for SNPs only). An HTML report with basic plots can also be generated for each tested phenotype (although this is not suggested when analyzing a large number of phenotypes).