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v1.9.4

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@edg1983 edg1983 released this 17 Dec 12:13
· 3 commits to main since this release
v1.9.4
4e9529c

This release fixes a bug in rare variants workflows and introduces a few minor upgrades and a config file restructure to increase flexibility.
The pipeline now uses regenie v4.0

Upgrades

  • Fixed a bug when exporting log files for regenie step2 in rare variants test
  • Add the possibility of running joint burden tests in step 2 (like minp, acat, sbat). This can be set using the new parameter rarevars_joint_test
  • Now use regenie v4.0
  • Starting resources required for regenie step2 rare variant analysis are now set at 8 cpus and 42G memory

Code refactoring

  • Use regenie directly from the official docker images for more flexibility
  • Updated docker image with upgrades to plink2 (now 20241206) and python packages
  • Minor changes to the configuration files
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