Nextflow quick intro

This repo aims at being a quick introduction to nextflow, that take half a day to complete with a instructor live-coding while attendees follow along.

Preqrequisites

Working locally

You'll need to have nextflow and docker installed on your machine.

Gitpod

you only need a github account in order to login into gitpod.

Getting started with this repository

clone the repository (or open it in gitpod)

git clone github.com/HadrienG/nextflow-quick-intro
cd nextflow-quick-intro

On to learning!

• Introduction // What is nextflow and why should i use it? // executing a whole pipeline // building a pipeline // modules

TODOS

fix conda in gitpod. conda init?