Add Keyboard Shortcuts and Command-Line Options wiki pages
Ground both in source (main.py argparse, molecule_scene.py key maps,
main_window_init.py QAction shortcuts) rather than the stale User-Manual
table, which still lists the pre-4.x Ctrl+R binding.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
5f1c56e
Expand 2D-to-3D and 3D-editing tips with settings names and alternatives
Tips-for-2D-to-3D-conversion: named the actual Settings > 3D Conversion
modes (Fallback/RDKit/Open Babel/Direct) and added the Linux caveat that
moleditpy-linux ships with Open Babel disabled, so only RDKit/Direct are
selectable there.
Tips-for-3D-editing: added Constrained Optimization as a more reliable
alternative to the terminal-atom-drag trick when a conformation still
snaps back, plus pointers to Move Group/Move Selected Atoms and the
Real-time 3D Drag setting as complementary techniques. JP pages kept in
sync with natural Japanese.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
97824a9
Point Shortcut guides at moleditpy-installer's automated setup first
Stale: these pages only documented the fully manual shortcut/file-
association steps, with no mention that moleditpy-installer (now the
documented recommended install path) already automates all of it per-OS.
Added a top-of-page tip on each EN/JP pair linking to the relevant
Installation-for-* page and installer flags, while keeping the manual
walkthrough intact for people who installed without the installer or want
a custom shortcut location.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
7907520
Add moleditpy-installer as primary install path; fix Python version claims
Stale: none of the three OS installation pages mentioned moleditpy-installer
(now the actual recommended route per the app README and installer v3.0.7's
own README), and none stated the real supported Python range. Verified
against moleditpy/pyproject.toml (requires-python >=3.9,<3.15; PyQt6 <6.10
only on 3.9, else <6.12) and python_molecular_editor_installer's TUI/CLI
behavior (v3.0.7: interactive Textual TUI, --no-tui/--desktop/--system
flags, per-OS shortcut/file-association behavior).
Windows/macOS: added "Method A: moleditpy-installer" ahead of the existing
Conda method, plus upgrade/uninstall steps for the Conda path (previously
missing).
Linux: clarified moleditpy-linux is still current/correct (OpenBabel
disabled to dodge the segfault-causing library conflict), added the
installer-based method alongside the existing manual venv+pip method, and
linked the Raspberry Pi troubleshooting page.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
3ab3f75
Overhaul User Manual pages: exhaustive walkthrough, fix stale version/license
Stale: wiki manual was frozen at v1.9.7 / Apache-2.0 license and missing
whole sections present in the real app (Move Group, Move Selected Atoms,
Constrained Optimization, Planarize, 3D conversion mode details, Settings
Other tab, 3D Atom Info index base, aromatic ring style, right-click quick
optimizer). Replaced with the current source-of-truth content mirrored
from python_molecular_editor/manual/manual.md (v4.5, kept in sync with the
app) and updated to 4.5.1 / GPL-3.0.
Added: a Settings section with full default-value tables read from
utils/default_settings.py, and a Menu Reference table cross-checked
against ui/main_window_init.py. Keyboard-Shortcuts/Using-Plugins/
Official-Plugins/File-Formats-and-Import-Export/Command-Line-Options are
now linked instead of duplicated, per the new dedicated pages another
agent is adding. JP page kept in sync with natural (non-machine-translated)
Japanese.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
074974f
Updated Installation with Docker JP (markdown)
1f6de02
Updated Installation with Docker (markdown)
15e09e2
Updated Installation for macOS (markdown)
f14dd99
Updated Installation for Windows (markdown)
91f9214
Updated Installation for Linux (markdown)
07a4bfd
Updated Installation for macOS (markdown)
7d0db11
Updated Installation for Windows (markdown)
e2dd3e7
Updated Tips for working with Dummy Atoms (*) (markdown)
7bca394
Updated How to Work with Dummy Atoms (*) (markdown)
a5c0959
Add wiki page for handling dummy atoms (Ref: #31)
f2d3438
Updated Raspberry Piでの起動トラブルシューティング (markdown)
b1fe830
Created Troubleshooting Launch Issues on Raspberry Pi (markdown)
41f958d
Created Raspberry Piでの起動トラブルシューティング (markdown)
09cbcbb
Created Shortcut Linux (markdown)
adc07a5
Created Shortcut Linux JP (markdown)
e1247f0