docs: update CLAUDE.md and ADR cross-references after Python migration#455
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- Add new "Python Orchestration Layer" subsection documenting extracted modules - Update section title to reference both ADR-006 and ADR-015 - Bump version from 2.0 to 3.0 reflecting complete decoupling - Create ADR-016 documenting Python module extraction rationale and consequences Closes #433 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Updates modules.md to reflect Keystone as pure transport layer with actual src/ layout (core/, concurrency/, network/, transport/, monitoring/, simulation/). Removes references to old module-based design and agent hierarchy (moved to ProjectAgamemnon per ADR-006/ADR-015).
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Closes #433
Closes #366
Updates CLAUDE.md to document Python orchestration extraction to ProjectAgamemnon (ADR-015/ADR-016), updates modules.md and build-system.md to reflect pure transport scope.