MadridJan2014EM
$ LOCATION: Residencia de Estudiantes CSIC (Madrid. Spain). $ DATES: January 13rd-15th, 2014
NEWS
- Registration is closed
- Slideshows are online. You can download the slideshows from the talks (PDF). Just click on the link of each talk (see #Programme_and_resources below)
Three-dimensional cryo-electron microscopy is a technique that allows direct visualization of biological macromolecules close to their native state. Not surprisingly, the high impact of this technique in the structural biology field is highly correlated with the development of new image processing algorithms, among other aspects. Many technical publications are available describing this new developments but, clearly, there are no substitute for hands-on training.
This course is aimed toPhD students and postdocs using cryo EM images for structural analysis. The objective of the course is to introduce the principles and practical aspects of image processing in transmission electron microscopy. The course will focus on processing of single particle images.
Click on the title of the talks to download the slideshow in PDF format.
We are publishing here the videos of the talks too, stay tuned. You may also watch all the videos in the 3DEM School 2014 Youtube playlist.
Monday (January 13rd, 2014)
13:00 - Welcome Reception
14:00 - J.M. Carazo: Welcome speech
14:30 - J.M. Carazo: /JMC_3D_EM_General_Presentation.pdf (General Introduction)
<iframe width="420" height="315" src="//www.youtube.com/embed/UmMph7E5PA4" frameborder="0" allowfullscreen></iframe>15:30 - C.O. Sorzano: /COSS_20140113_BasicImageProcessing_for_EM.pdf (Fourier transform, central section theorem, sampling...)
<iframe width="420" height="315" src="https://www.youtube.com/embed/TeGFO6y1m_E" frameborder="0" allowfullscreen></iframe>16:30 - COFFEE BREAK
17:00 - J. Vargas: /JV-20140113-CTF.pdf
18:00 - Attendees: 5 minutes talks
Tuesday 14th
09:00 - J.M. de la Rosa: /JMRT-20140114-SingleParticle2D.pdf
<iframe width="420" height="315" src="https://www.youtube.com/embed/miOHko69tm0" frameborder="0" allowfullscreen></iframe>10:00 - C.O. Sorzano: /COSS-20140114_3D_Reconstruction_EM.pdf
<iframe width="420" height="315" src="https://www.youtube.com/embed/j2t0xqcnaxM" frameborder="0" allowfullscreen></iframe>11:00 - COFFEE BREAK
11:30 - R. Marabini: /RM_Icosaedral_viruses_reconstruction.pdf
<iframe width="420" height="315" src="https://www.youtube.com/embed/EdbTCDlDGCc" frameborder="0" allowfullscreen></iframe>12:30 - J. Segura: /JSM-20140114-Integrative_techniques.pdf
<iframe width="420" height="315" src="https://www.youtube.com/embed/QMAZaNgpR0w" frameborder="0" allowfullscreen></iframe>13:30 - LUNCH
14:30 - C.O. Sorzano: /COSS-20140114_Xmipp_Tutorial.pdf
16:30 - COFFEE BREAK
17:00 - C.O. Sorzano: Basic XMIPP Tutorial (II)
Wednesday 15th
09:00 - J.M. de la Rosa, R. Marabini: Advanced Xmipp Tutorial (Classification)
11:00 - COFFEE BREAK
11:30 - J.M. de la Rosa: "Future Developments"
13:30 - LUNCH
The course fee is 350 euro, which includes accommodation and all meals during the course.
Additionally, there are 5 travel grants for attendees from Instruct countries (http://www.structuralbiology.eu/resources/countries ), for up to 500 euro, to cover airplane tickets (200 euro) and reduced registration fee (300 euro).
If you want to apply for a travel grant, please send an e-mail to blanca@cnb.csic.es including:
- short CV
- brief explanation of the impact of this course in your work
Registration fee for those living in Madrid 250 euro.
Deadline for registration: December 1st, 2013.
Registration is closed. A participant list appeared on December 5th.
Bank transfer to: Centro Nacional de Biotecnología - CNB
Bank Name: Santander Central Hispano
Address: Julio Palacios, 23. 28029, Madrid. Spain
Account: 0049 5926 41 2816155571
IBAN: ES91 0049 5926 4128 1615 5571
Swift: BSCHESMM
Please include your name in the wire concept
Please, bring a laptop or alternatively pair up with another particpant who has a laptop. Wireless connection will come handy.
Although it is not compulsory, participants are recommended to download the tutorial data and install the Xmipp software:
- Download the following files:
- Install Xmipp in your laptop. You may try the binaries stored NewDownload or download the code and compile it as explain HowToInstall#Latest_version_from_Git_reposito.
| Name | Institute |
|---|---|
| Wouter Van Putte | L-Probe (Ghent University) |
| Sathish Yadav | University of groningen |
| Charlotte Melia | Leiden University Medical Center |
| GAZI Anastasia | CNRS |
| Hind AL-Khayat | Qatar Foundation |
| Michele Darrow | National Center for Macromolecular Imaging at Baylor College of Medicine |
| Roberto Marotta | Istituto Italiano di Tecnologia |
| Alberto Casu | Istituto Italiano di Teconologia |
| Lugmayr Wolfgang | IMBA |
| Lucía Quintana | CNB |
| Ravindra Thakkar | National Institute of Mental Health And Neuro Sciences |
| LIN ZHU | The Royal Institute of Technology KTH |
| Charles SABIN | CEITEC-Masaryk University |
| Michele Lunelli | Max Planck Institute for Infection Biology |
| Io Almagro | Universidad de Granada |
| Jose Javier Conesa Muñoz | CNB-CSIC |
| Rampradeep Samiappan | Karolinska Institutet |
| Hardt Martin | University of Giessen |