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Angular_class_average_v3

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Adrian Quintana edited this page Dec 11, 2017 · 1 revision

!xmipp_mpi_angular_class_average (v3.0)

Usage

Make class average images and corresponding selfiles from angular_projection_matching docfiles.

See also Angular_project_library_v3 Angular_projection_matching_v3

Parameters

$: Docfile with assigned angles for all experimental particles $: Docfile with angles used to generate the projection matching library $: Output rootname for class averages and selfiles $: Also output averages of random halves of the data $--wien <img> $--pad <factor1.> $``: Save images assigned te each class in output metadatas

IMAGE SELECTION BASED ON INPUT DOCFILE (select one between: limit 0, F and R $--select &lt;colmaxCC> $: Discard images below <l0> $: Discard images above $: if (lRc>0 && lRc< 100): discard lowest <lRc> $: if (lRp>0 && lRp< 100): discard lowest

REALIGNMENT OF CLASSES $--iter &lt;nr_iter0> $--Ri &lt;ri1> $--Ro &lt;r0-1> =: Outer radius to limit rotational search ro -1 -> dim/2-1 --mpi_job_size &lt;size10>

Examples and notes

Sample at default values and calculating output averages of random halves of the data

xmipp_angular_class_average -i proj_match.doc --lib ref_angles.doc -o out_dir --split

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