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@fedorov fedorov released this 07 May 21:17
· 23 commits to main since this release
v1.6.0
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Learn about vigilant mode.

Added

  • tests/test_bq_snippets.py: BigQuery snippet validation using bq query --dry_run — 33 tests covering all SQL examples in references/bigquery_guide.md (dicom_all, original_collections_metadata, segmentations, quantitative_measurements, qualitative_measurements, private elements, and clinical tables); skips automatically when bq CLI is unavailable or unauthenticated

Security

  • Fixed auto-upgrade subprocess call to pin idc-index to REQUIRED_VERSION (was "idc-index", now f"idc-index=={REQUIRED_VERSION}"), ensuring the installed version always matches the tested version declared in the frontmatter
  • Added network access transparency note to Overview documenting expected external endpoints (GCS, S3, BigQuery, DICOMweb proxy, Google Healthcare API) and clarifying that no credentials or environment variables are accessed by the skill
  • Added tested-with version comment to optional dependency install block (pandas>=1.5, numpy>=1.23, pydicom>=2.3)

Changed

  • Updated frontmatter description to be directive about skill triggering: now explicitly instructs invocation for IDC-related queries even without the word "IDC" in the prompt
  • Extracted "Batch Processing and Filtering" (section 6) from SKILL.md to references/use_cases.md (Use Case 5); replaced inline code block with a 2-sentence summary and pointer
  • Extracted "Integration with Analysis Pipelines" (section 9) from SKILL.md to references/use_cases.md (Use Case 6); replaced inline pydicom/SimpleITK code blocks with a 2-sentence summary and pointer
  • SKILL.md reduced from 865 → 775 lines (−90 lines); references/use_cases.md expanded from 187 → 278 lines
  • Updated to idc-index 0.12.1 (idc-index-data 24.0.4, IDC data version v24)
  • IDC v24 adds 15 new collections (161 → 176), ~39K new series, ~4 TB new data (99.27 TB total, 85,682 cases)
  • Updated collections_index column names to snake_case (idc-index-data 24.0.0 breaking change):
    CancerTypes → cancer_types, TumorLocations → tumor_locations,
    Subjects → subjects, Species → species, Sources → sources,
    SupportingData → supporting_data, Program → program_id
  • Updated analysis_results_index column names to snake_case (idc-index-data 24.0.4 breaking change):
    Subjects → subjects, Collections → collections, Modalities → modalities

Full Changelog: v1.5.0...v1.6.0

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