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Update PRONTO to handle the different date format in MTF files #84

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Merged
xiaoliz0 merged 1 commit into from
Oct 10, 2025
Merged

Update PRONTO to handle the different date format in MTF files #84

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8 changes: 7 additions & 1 deletion Script/PRONTO.py
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Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@
import shutil
import getopt
import time
from datetime import datetime
from configparser import ConfigParser
from xlutils.copy import copy
from pptx import Presentation
Expand Down Expand Up @@ -457,7 +458,12 @@ def get_patient_info_from_MTF_new(ipd_material_file,ipd_no,DNA_sampleID,RNA_samp
datetime_date = str(xlrd.xldate_as_datetime(ipd_birth_date_exl,0))
ipd_birth_year = datetime_date.split('-')[0]
except:
ipd_birth_year = "-"
try:
day, month, year = map(int, ipd_birth_date_exl.split('.'))
datetime(year,month,day)
ipd_birth_year = str(year)
except:
ipd_birth_year = "-"
if(sheet_material.cell_value(r,c) == columns['gender'] and ipd_gender == ""):
ipd_gender = str(sheet_material.cell_value(r+2,c))
if(sheet_material.cell_value(r,c) == columns['age']):
Expand Down