Remove debug statement from tumor_normal_happhase workflow#104
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robert-a-forsyth with Copilot wants to merge 1 commit into
Closed
Remove debug statement from tumor_normal_happhase workflow#104robert-a-forsyth with Copilot wants to merge 1 commit into
robert-a-forsyth with Copilot wants to merge 1 commit into
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[WIP] Address feedback on the 'Template' pull request
Remove debug statement from tumor_normal_happhase workflow
Nov 24, 2025
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Description
Addresses feedback from #103 to remove
mixed_hapbams.view()debug statement at line 223 insubworkflows/local/tumor_normal_happhase.nf.The debug statement was already removed in commit 1f610c4. No further changes required.
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).💡 You can make Copilot smarter by setting up custom instructions, customizing its development environment and configuring Model Context Protocol (MCP) servers. Learn more Copilot coding agent tips in the docs.