Skip to content

Merge dev into main.#13

Merged
s-t-h merged 13 commits intomainfrom
dev
Oct 13, 2025
Merged

Merge dev into main.#13
s-t-h merged 13 commits intomainfrom
dev

Conversation

@s-t-h
Copy link
Copy Markdown
Collaborator

@s-t-h s-t-h commented Oct 13, 2025

No description provided.

s-t-h added 13 commits October 8, 2025 10:45
@s-t-h
Updates gradle build file.
236baa8
@s-t-h
Fixes handling of temporary directory in case that no task is executed.
5276cb0
@s-t-h
Updates documentation.
ae1fbfa
@s-t-h
Adapts formatting of help messages. Stack trace is now printed on exc…
1e86ed8 
…eptions.
@s-t-h
Adds underscore constant.
b27a10f
@s-t-h
Implements optional location parameter and various file-splitting mod…
5d744e7 
…es for sequence export.
@s-t-h
Fixes issue with gradle task dependencies.
653045d
@s-t-h
Adjusts sequence export directory generation.
b97db9a
@s-t-h
Adds check for missing alternative to VariantAnnotator processing of …
ea448ed 
…SnpEff ANN fields.
@s-t-h
Fixes typo in file name generation.
9aa8e88
@s-t-h
Fixes handling of DP4 coverage annotations in VCF files.
dc211fd
@s-t-h
Introduces more efficient variant integration functions depending on …
f05a5eb 
…whether to include or exclude gaps.
@s-t-h
Updates README.
d1331f3
@s-t-h s-t-h self-assigned this Oct 13, 2025
@s-t-h s-t-h added enhancement New feature or request documentation Update of documentation and/or descriptions labels Oct 13, 2025
@s-t-h s-t-h merged commit 498ac2e into main Oct 13, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

No reviews

Assignees

@s-t-h s-t-h

Labels

documentation Update of documentation and/or descriptions enhancement New feature or request

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

1 participant

@s-t-h