**Data and code for: Model projections of the epidemiological benefit of pyrethroid-pyrrole insecticide treated nets against malaria **

**Authors: Thomas S. Churcher, Isaac J. Stopard, Arran Hamlet, Dominic P. Dee, Antoine Sanou, Mark Rowland, Moussa W. Guelbeogo, Basiliana Emidi, Jacklin F. Mosha, Joseph D. Challenger, Adrian Denz, Andrew Glover, Giovanni D. Charles, Emma L. Russell, Rich Fitzjohn, Pete Winskill, Christen Fornadel, Tom Mclean, Peder Digre, Joe Wagman, Frank Mosha, Jackie Cook, Martin C Akogbéto, Luc S. Djogbenou, Hilary Ranson, Philip McCall, Alphaxard Manjurano, Sagnon N’Falé, Natacha Protopopoff, Manfred Accrombessi, Corine Ngufor, Geraldine Foster, Ellie Sherrard-Smith **

This GitHub repository provides all code necessary to run the model validation for this paper.

1️⃣ read_data.R - reads in the trial data and values needed to parameterise the model.

2️⃣ run_model.R - runs and saves the simulations.

3️⃣ run_model_functions.R helper functions to run the model simulations.

4️⃣ calc_net_top_up.R - estimates the net coverages for all the trial arms.

5️⃣ retention_fit_top_up.R generic Stan model and code to estimate the coverages for a single trial arm.

6️⃣ functions.R - helper functions to estimate the net coverages.

7️⃣ plot_model.R - generates the plots and extracts the required values from all simulations.

Notes

⚠️ Please note that the simulations are not saved on the Github repository, so will need to be run before attempting to visualise the results.

⚠️ This code is released with no support and we cannot endorse any outputs from the model other than those we generate.

⚠️ This code is under development, so code may change without notice.

⚠️ No liability is accepted by the authors.