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Blueback gcc@14, new variant fix_rt_linkage for intel-oneapi-compilers + bug fix in spack stack check-preferred-compiler, codee 2026.1.2 #1999

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Blueback gcc@14, new variant fix_rt_linkage for intel-oneapi-compilers + bug fix in spack stack check-preferred-compiler, codee 2026.1.2 #1999

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d7c69cd
Add gcc@14.2.1 on Bounty
climbfuji Apr 6, 2026
7608096
Update submodule pointer for repos/builtin
climbfuji Apr 10, 2026
46a67a1
Merge branch 'develop' of https://github.com/jcsda/spack-stack into d…
climbfuji Apr 14, 2026
c864f9f
Update .gitmodules and submodule pointer for repos/builtin for code r…
climbfuji Apr 15, 2026
4aa4df6
Merge branch 'develop' of https://github.com/jcsda/spack-stack into f…
climbfuji Apr 15, 2026
b5681ad
Revert .gitmodules and update submodule pointer for repos/builtin
climbfuji Apr 16, 2026
fa26ecc
Add configs/sites/tier1/blueback/packages_gcc-14.3.0.yaml
climbfuji Apr 17, 2026
3a4edc0
Fix bug in gcc@14 config for Blueback in util/nrl/batch_install.sh; r…
climbfuji Apr 27, 2026
5b5e76a
Merge branch 'develop' of https://github.com/jcsda/spack-stack into f…
climbfuji Apr 27, 2026
762c074
Update .gitmodules and submodule pointer for repos/builtin
climbfuji Apr 27, 2026
ee21288
configs/sites/tier1/blueback/packages_oneapi-2025.0.4.yaml: add varia…
climbfuji Apr 27, 2026
56faa13
Revert .gitmodules and update submodule pointer for repos/builtin
climbfuji Apr 27, 2026
346b897
Add +fix_rt_linkage variant to external Intel oneAPI compiler specs i…
climbfuji Apr 27, 2026
f064929
Bug fix in spack-ext/lib/jcsda-emc/spack-stack/stack/compiler_utils.p…
climbfuji Apr 28, 2026
6177af9
Add variant +fix_rt_linkage to bounty tier2 site config for oneapi@20…
climbfuji Apr 28, 2026
89b0f05
configs/common/packages_oneapi.yaml: build patchelf with gcc
climbfuji Apr 28, 2026
3ae511e
configs/common/packages.yaml: codee@2026.1.2
climbfuji May 1, 2026
71146b2
Add variant +fix_rt_linkage to external intel-oneapi-compilers specs …
climbfuji May 1, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/ubuntu-ci-x86_64-oneapi-ifx.cfg
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
intel-oneapi-compilers:
externals:
- spec: intel-oneapi-compilers@2024.2.0
- spec: intel-oneapi-compilers@2024.2.0 +fix_rt_linkage
prefix: /opt/intel/oneapi
extra_attributes:
compilers:
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2 changes: 1 addition & 1 deletion .github/workflows/ubuntu-ci-x86_64-oneapi.cfg
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
intel-oneapi-compilers:
externals:
- spec: intel-oneapi-compilers@2024.2.0
- spec: intel-oneapi-compilers@2024.2.0 +fix_rt_linkage
prefix: /opt/intel/oneapi
extra_attributes:
compilers:
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2 changes: 1 addition & 1 deletion configs/common/packages.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -86,7 +86,7 @@ packages:
- +ownlibs
codee:
require:
- '@2026.1'
- '@2026.1.2'
crtm_fix:
require:
- ~link-big-endian
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3 changes: 3 additions & 0 deletions configs/common/packages_oneapi.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -62,6 +62,9 @@ packages:
parallel-netcdf:
require:
- +shared-intel
patchelf:
require:
- '%c=gcc'
py-maturin:
require:
- '%c=gcc'
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2 changes: 1 addition & 1 deletion configs/sites/tier1/atlantis/packages_oneapi-2024.2.1.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ packages:
intel-oneapi-compilers:
buildable: false
externals:
- spec: intel-oneapi-compilers@2024.2.1
- spec: intel-oneapi-compilers@2024.2.1 +fix_rt_linkage
prefix: /cm/shared/apps/intel/oneapi-2024.2.1
modules:
- intel-oneapi-2024.2.1
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2 changes: 1 addition & 1 deletion configs/sites/tier1/atlantis/packages_oneapi-2025.3.0.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ packages:
intel-oneapi-compilers:
buildable: false
externals:
- spec: intel-oneapi-compilers@2025.3.0
- spec: intel-oneapi-compilers@2025.3.0 +fix_rt_linkage
prefix: /gpfs/neptune/spack-stack/oneapi-2025.3.0
modules:
- umf/1.0.2
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39 changes: 39 additions & 0 deletions configs/sites/tier1/blueback/packages_gcc-14.3.0.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,39 @@
packages:
all:
require:
- any_of: ['%gcc@=14.3.0']
when: '%gcc'
mpi:
buildable: false
require:
- cray-mpich@8.1.32
gcc:
buildable: false
externals:
- spec: gcc@14.3.0 languages:='c,c++,fortran'
prefix: /usr
modules:
- PrgEnv-gnu/8.6.0
- gcc-native/14.2
extra_attributes:
compilers:
c: /opt/cray/pe/gcc-native/14/bin/gcc
cxx: /opt/cray/pe/gcc-native/14/bin/g++
fortran: /opt/cray/pe/gcc-native/14/bin/gfortran
environment:
set:
CONFIG_SITE: ''
PE_GCC_EXTERNAL: native
cray-mpich:
buildable: false
externals:
- spec: cray-mpich@8.1.32
prefix: /opt/cray/pe/mpich/8.1.32/ofi/GNU/12.3
modules:
- libfabric/1.22.0
- craype-network-ofi
- cray-mpich/8.1.32
extra_attributes:
environment:
prepend_path:
CMAKE_PREFIX_PATH: /p/app/projects/NEPTUNE/spack-stack/cmake-findmpi
2 changes: 1 addition & 1 deletion configs/sites/tier1/blueback/packages_oneapi-2025.0.4.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ packages:
intel-oneapi-compilers:
buildable: false
externals:
- spec: intel-oneapi-compilers@2025.0.4
- spec: intel-oneapi-compilers@2025.0.4 +fix_rt_linkage
prefix: /p/app/intel/oneapi-combined
modules:
- PrgEnv-intel/8.6.0
Expand Down
2 changes: 1 addition & 1 deletion configs/sites/tier1/narwhal/packages_oneapi-2024.2.0.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ packages:
intel-oneapi-compilers:
buildable: false
externals:
- spec: intel-oneapi-compilers@2024.2.0
- spec: intel-oneapi-compilers@2024.2.0 +fix_rt_linkage
prefix: /opt/intel/oneapi_2024.2.0.634
modules:
- PrgEnv-intel/8.5.0
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2 changes: 1 addition & 1 deletion configs/sites/tier1/nautilus/packages_oneapi-2024.2.1.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ packages:
intel-oneapi-compilers:
buildable: false
externals:
- spec: intel-oneapi-compilers@2024.2.1
- spec: intel-oneapi-compilers@2024.2.1 +fix_rt_linkage
prefix: /p/app/projects/NEPTUNE/spack-stack/oneapi-2024.2.1
modules:
- tbb/2021.13
Expand Down
2 changes: 1 addition & 1 deletion configs/sites/tier1/nautilus/packages_oneapi-2025.3.0.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ packages:
intel-oneapi-compilers:
buildable: false
externals:
- spec: intel-oneapi-compilers@2025.3.0
- spec: intel-oneapi-compilers@2025.3.0 +fix_rt_linkage
prefix: /p/app/projects/NEPTUNE/spack-stack/oneapi-2025.3.0
modules:
- tbb/2022.3
Expand Down
2 changes: 1 addition & 1 deletion configs/sites/tier2/blackpearl/packages_oneapi-2024.2.1.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ packages:
- intel-oneapi-mpi@2021.13
intel-oneapi-compilers:
externals:
- spec: intel-oneapi-compilers@2024.2.1
- spec: intel-oneapi-compilers@2024.2.1 +fix_rt_linkage
prefix: /opt/intel/oneapi
extra_attributes:
compilers:
Expand Down
2 changes: 1 addition & 1 deletion configs/sites/tier2/bounty/packages_oneapi-2025.3.0.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ packages:
intel-oneapi-compilers:
buildable: false
externals:
- spec: intel-oneapi-compilers@2025.3.0
- spec: intel-oneapi-compilers@2025.3.0 +fix_rt_linkage
prefix: /opt/intel/oneapi
extra_attributes:
compilers:
Expand Down
2 changes: 1 addition & 1 deletion repos/builtin
Open in desktop
Submodule builtin updated 3 files
+2 −0 repos/spack_repo/builtin/packages/codee/package.py
+6 −0 repos/spack_repo/builtin/packages/intel_oneapi_compilers/package.py
+14 −0 repos/spack_repo/builtin/packages/intel_oneapi_runtime/package.py
9 changes: 7 additions & 2 deletions spack-ext/lib/jcsda-emc/spack-stack/stack/compiler_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -101,6 +101,12 @@ def check_preferred_compiler():
# different) compiler for the environment instead.
if preferred_compiler_name == compiler_name and preferred_compiler_version == compiler_version:
logging.info(f" ... {spec.name}@{spec.version}/{spec.dag_hash(length=7)} uses preferred compiler")
# If the package config doesn't have an entry for the package, then it should be
# built with the preferred compiler. However, because it failed the "if" test
# above, we know it is not.
elif not spec.name in package_config.keys():
errors += 1
logging.error(f" ... {RED}error: {spec.name}@{spec.version}/{spec.dag_hash(length=7)} does not use intended compiler{RESET}")
else:
spec_required_compiler_name = None
spec_required_compiler_version = None
Expand Down Expand Up @@ -147,8 +153,7 @@ def check_preferred_compiler():
logging.info(f" ... {spec.name}@{spec.version}/{spec.dag_hash(length=7)} uses explicitly preferred compiler")
else:
errors += 1
logging.error(f" ... {RED}error: {spec.name}@{spec.version}/{spec.dag_hash(length=7)} does not use intended compiler\n" + \
f" check also that any explicit preferred/required compiler dependencies are using Spack v1 syntax{RESET}")
logging.error(f" ... {RED}error: {spec.name}@{spec.version}/{spec.dag_hash(length=7)} does not use intended compiler{RESET}")
if errors==1:
raise Exception(f"{RED}Detected {errors} compiler mismatch!{RESET}")
elif errors:
Expand Down
4 changes: 2 additions & 2 deletions util/nrl/batch_install.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -141,7 +141,7 @@ case ${SPACK_STACK_BATCH_HOST} in
SPACK_STACK_CARGO_MIRROR="/neptune_diagnostics/spack-stack/cargo-mirror"
;;
blueback)
SPACK_STACK_BATCH_COMPILERS=("oneapi@=2025.0.4" "gcc@=13.3.0") # oneapi@=2025.2.1
SPACK_STACK_BATCH_COMPILERS=("oneapi@=2025.0.4" "gcc@=13.3.0" "gcc@=14.3.0") # oneapi@=2025.2.1
SPACK_STACK_BATCH_TEMPLATES=("neptune-dev" "unified-dev" "cylc-dev")
SPACK_STACK_MODULE_CHOICE="tcl"
SPACK_STACK_BOOTSTRAP_MIRROR="/p/app/projects/NEPTUNE/spack-stack/bootstrap-mirror"
Expand Down Expand Up @@ -671,7 +671,7 @@ for compiler in "${SPACK_STACK_BATCH_COMPILERS[@]}"; do
case ${submit_to_scheduler} in
"true")
jobs=$(tasks_per_node ${host})
parallel_install_flags="--concurrent-packages=10 --jobs=${jobs}"
parallel_install_flags="--concurrent-packages=4 --jobs=${jobs}"
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@climbfuji climbfuji May 1, 2026

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Discovered while rebuilding everything from scratch (i.e. not reusing the build cache - too many concurrent packages with too many make threads exhausted the available resources, even on Blueback).

;;
"false")
parallel_install_flags=""
Expand Down
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