MethQC-0.5.2

Data: 2026.05.12
Major modification:

1. Finalize HTML format.

Minor modifcation:

1. Add doc directory for markdown files.

MethQC-0.5.1

Date: 2026.04.22
Major update:

1. Fix a small bug for round up of filter threshold
2. Finalized HTML output

MethQC-0.5.0

Data: 2026-04-03
Major update:

1. Add methqc_batch for QC in specific regions defined BED files

Minor update:

1. Add ./doc/mod_threshold.md
2. Update readme.md

MethQC-0.4.0

Date: 2026-01-26
Major update:

1. Change the logic of modification probability cutoff calculation (user-defined or directly run modkit)
2. Fix a few bugs for methylation sites remapping
3. Remove no-coverage percentage from MQI calculation

Minor update:

1. Change the GUI
2. Fix edge cases error
3. Add header for --detail-bed output

MethQC-0.3.0

Date: 2025. 11. 29
Major update:

1. Add more output to stdout
2. Fix a bug for regional QC

MethQC-0.2.0

Date: 2025. 08. 22
Major update:

1. Fix bugs for MethQC problematics sites calculation
2. Change float output format for --detail-bed
3. Use modification probability to filter sites
4. Add more information for --verbose

MethQC-0.1.3

Date: 2025. 06.18
Major modification:

1. Fix MAPQ caluclation bug in output bed file
2. Remove redundant code in read_bam.py

MethQC-0.1.2

Date: 2025. 06.14
Major modification:

1. Fix sidebar navigation bug in html output
2. Remove mod read counts

From this version, tests folder will not be included in the release package.

MethQC-0.1.1

Date: 2025. 06. 12
Major modifications:

1. Actively check if user input sequence patter is palidromic
2. Check if BAM is sorted
3. Add more information in the output chart
4. Allow .svg download of the figure in output html
5. Ajust the size of figures in the output html

MethQC-0.1.0

Date: 2025. 06. 05
MethQC first release