Python code to extract many plasmid sequences providing the ID of the plasmid in a CSV file.
""" Version 1.0 - 5 of september 2016.
This script extracts plasmids sequences from DNASU. Takes a CSV file with a plasmid ID in each row, and returns a new file with each plasmid sequence in the same position.
The script is far from error-proof. It considers blank spaces in the csv, but none other than that: it doesn't consider the possibility of various results in the DNASU Search, for example.
By default the input file name is "DNASU_IDS.csv" (Place the file in the Python working directory before executing the script). In line 77 you can modify the input file name. The output file name is DNASU_out.csv, again, you can modify it in line 79.
"""