Added description of how polytomies are handled
Updated Home (markdown)
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Updated _Sidebar (markdown)
Created Source code (markdown)
Updated Understanding outputs (markdown)
Fixing links to basicPlotteR package
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Updated to include help about Rcpp
Updated Input formats (markdown)
Updating to include information about INDELs
Adding information about INDEL CSV format
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Created Citation (markdown)
Updated Calculating consistency index (markdown)