v2.46.0

What's Changed

Changes since v2.45.0:

• Enhance documentation for cellxgene-census and deepTools skills. Update cellxgene-census to version 1.1, expanding description, compatibility notes, and data structure details for single-cell and spatial transcriptomics. Revise deepTools to version 1.1, improving installation instructions, normalization methods, and adding new features for effective genome size and scaling. Update quick reference and workflow scripts for better usability and clarity. (758bad1)
• Update anndata skill documentation to version 1.1, enhancing compatibility notes and installation instructions. Introduce experimental APIs for lazy loading and concatenation, and clarify usage of deprecated methods. Update best practices for I/O operations and metadata handling. (b24a631)
• Update LaminDB, Pennylane and Neuropixles skills (b2a969e)
• Update scanpy skill documentation to include support for R-native single-cell formats. Bump version to 1.2 and enhance conversion instructions for Seurat and SingleCellExperiment files to .h5ad. Add references for R interoperability and clarify usage scenarios. (40103c9)
• chore: update security scan report [skip ci] (9312485)
• Update scvi-tools (effb57c)
• Update scikit-bio (450905e)
• Update Modal skill (f401d0e)
• Add bulk-rnaseq workflow skill (01c6a9e)
• Add pathway-enrichment skill (a3fafab)