Our BW implementation for a Read mapper. Bio465
To Use: python bbw_mapper.py input (prefix for .ref and .bwref files) read (full name of read file) -o output (optional output)
Examples:
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For 1data
python bbw_mapper.py 1data/chr1 1data/chr1.reads -o output1
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For 2data
python bbw_mapper.py 2data/Chr19Partial 1data/Chr19Partial.bwref.reads -o output2