In-house tools/pipelines by Kelvin Lee

For any questions, please contact with me. My contact information is available at:
https://github.com/KaWingLee9

Table of Contents

Data analysis pipeline

• OncoMolPath: A comprehensive WXS and RNA-Seq workflow for tumor molecular pathology and precision medicine
• Data analysis of RNA-Seq
• Data analysis pipeline of multiplexed imaging data (Python)
• [Tumor evolution analysis from multi-omics data]

Small tricks and tools

• Custom R visualization functions
• Conver Seurat object (v4) to scanpy object (for both single-cell and spatial-omics data)
• Clustering result assessment
• Meta analysis
• Curated gene sets