This python package provides an easy way to create projects and upload samples into Cellenics.
To install the package execute the following line:
pip install --upgrade pip
pip install cellenics_api`In order to use the package you first need to create an account in Cellenics (https://scp.biomage.net/) if you don't have one yet.
Then the package is used in the following way:
import cellenics_api
# 1. Authenticate user and create a connection tunnel with the api
connection = cellenics_api.Connection('email', 'password')
# 2. Create an experiment
experiment_id = connection.create_experiment()
# 3. Upload samples associated with the experiment
connection.upload_samples(experiment_id, 'local/path/to/samples')Once the upload is complete you can navigate to Cellenics and process your project there.
Max retries exceeded with url: / (Caused by SSLError(SSLEOFError(8, 'EOF occurred in violation of protocol (_ssl.c:2396)')))
- Navigate to your project in Cellenics and manually delete the failed sample
- Run step #3 again
This will be fixed when error handling is introduced