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fixing tutorial#74

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acumpelik merged 16 commits intomainfrom
viggy
Jan 6, 2026
Merged

fixing tutorial#74
acumpelik merged 16 commits intomainfrom
viggy

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@vviggyy
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@vviggyy vviggyy commented Jan 5, 2026

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vviggyy and others added 11 commits January 5, 2026 12:36
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Added a note to watch the pRNN repository for updates.
Updated emoji from '👀' to '👁️' for consistency.
Added a section for postdoc fellowships with a link to funding opportunities.
Updated recommended reading list with new references on sleep and memory consolidation.
Comment thread docs/Resources/prnn_tutorial.md Outdated
Comment thread docs/Resources/prnn_tutorial.md Outdated
Comment thread docs/Resources/prnn_tutorial.md Outdated
Comment thread docs/Resources/prnn_tutorial.md Outdated
Comment thread docs/Resources/prnn_tutorial.md Outdated
Updated directory references and installation instructions for clarity.
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  • Step 3: instead of home project folder, use project folder with more storage: cd /gpfs/radev/project/levenstein/[net_id]
  • Step 5: missing = in wheel=0.37.0
  • Since we're not using requirements.txt anymore, put Run pip install ipykernel back in Step 7

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@dlevenstein dlevenstein left a comment

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looks great. thanks guys!

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This works now! Changes:

  • In step 1, add "(If you are using the VS Code Proxy, as described in vs_code.md, you are already on a compute node.)"
  • Consider switching steps 4 and 5, so that cookiecutter gets installed in your conda environment
  • Fix paths in step 7, currently they point to your home folder (e.g. replace ~ with ..)
  • Specify that the tutorial nb needs to be copied to the prnn_tutorial folder (If you are in prnn_tutorial, you can run rsync -r ../pRNN/examples/ .

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merge steps 1i and 1ii

Consolidate steps for managing requirements on Misha.
@acumpelik acumpelik merged commit 65f8ba5 into main Jan 6, 2026
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3 participants