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@LoukiaSpin LoukiaSpin released this 30 Jun 08:52
  • Replaced mcmcplots with coda R package.
  • Function plot_study_dissimilarities:
    • Presents the range of Gower's dissimilarity values for each study in the
      network, as well as their between- and within-comparison dissimilarities
      (based on the function comp_clustering).
  • Function study_perc_contrib:
    • Calculates the percentage contributions of each study to every possible
      pairwise comparison in the investigated network and returns a data-frame.
      Study percentage contributions are based on Donegan et al.,
      (2018) doi:10.1002/jrsm.1292
  • Function covar_contribution_plot:
    • Returns a scatter plot of the study percentage contributions against the
      values of a continuous study-level covariate for the treatment effects of
      the basic parameters, functional parameters or both (based on the function
      study_perc_contrib).
  • Function forestplot_juxtapose:
    • Provides a forest plot juxtaposing several NMA models (via the functions
      run_model and run_metareg) based on posterior treatment effects
      (including predictions) of all treatments versus a selected comparator and a
      forest plot with the corresponding SUCRA values.
  • Function __heter_density_plot __:
    • Creates the density plot of two prior distributions for the between-study
      variance (log-normal and location-scale t distributions) or between-study
      standard deviation (half-normal distribution). This plot aids in deciding
      how to define the argument heter_prior in run_model to run random-effects
      network meta-analysis.
  • Function inconsistency_variance_prior:
    • Calculates the hyperparameters of the log-normal distribution and
      location-scale t-distribution of the inconsistency variance in the log-odds
      ratio and standardised mean difference scales, respectively, based on
      selected empirical distributions for the between-study variance proposed by
      Turner et al. (2015) doi:10.1002/sim.6381 and Rhodes et al. (2015)
      doi:10.1016/j.jclinepi.2014.08.012. Calculations are based on Law et al.,
      (2016) doi:10.1186/s12874-016-0184-5.
  • Function table_tau2_prior:
    • Returns a table with the hyperparameters of the predictive distributions
      for the between-study variance developed by Turner et al. (2015)
      doi:10.1002/sim.6381 and Rhodes et al. (2015)
      doi:10.1016/j.jclinepi.2014.08.012. This table aids in selecting the
      hyperparameters for the function heterogeneity_param_prior when
      considering an informative prior distribution for the between-study variance
      parameter to conduct random-effects network meta-analysis.