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Looks good to me from: mas.dit.maap-project.org/root/maap-workspaces/jupyterlab/python:ext-update
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Feb 26, 2025
* Bumped jupyter-server-ext version (#147) bump jl ext version * Feature/remove pygeos (#148) removed pygeos from all packages * Bump jupyter server ext (#150) increased the jupyter server extension version for the pangeo image * Chore/devfile metadata update (#149) updated release version from 4.1.0 to 4.1.1 * Remove environments json (#152) * removed setting environment env var and copying in file * added jupyter server extension for testing * uploaded new built jupyter server extension with returning what I want to print * jupyter server extension without using environments file * uploaded built wheel with getting host from parameter not environment variable * switched to using dps and maap-py updates * final working version for extension PRs * changed to point to new versions * Libpq dev update (#153) develop image is failing right now so upgrading libpq-dev from 13.16 to 13.17 * Libpq dev update (#154) upgraded libpq-dev * Feature/container url dropdown (#155) * first attempt of container urls being a dropdown * fixed bug with dropdown not changing * only one call to getWorkspaces * added env vars to devfiles and edited dockerimage_path name * updated the algorithms extension version * added DEFAULT_DOCKERFILE_PATH as env variable * added 2nd --build-arg tag * corrected the dps base image url * added print statements to jupyter server extension * reverted back to old jupyter server extension right after removing need for environments.json to see if this fixes the problem * reverted changes for container url dropdown branch * corrected default and base image to be switched back * Feature/update packages (#156) * updated packages for pangeo image * removed versions from s3fs and boto3 * updating isce3 packages * removed some package versions * updated hdf5 * removed package versions and gdal * removed another version * removed all package versions for isce3 image * updated all packages * unpinned some package versions and removed pygeos * unpinned some more package versions * unpinned more package versions and removed Fgmutils install * unpinned lonboard version for r image * pinned all versions from built images * updated package versions for pangeo image to match pangeo notebook * unpinned some package versions * unpinned more package versions * unpinned almost all versions * pinned some more package versions * pinned more packages * unpinned xcube * converted back to prevous pinned packages * added pins back in for R and added Fgmutils to install * not installing conda packages and nlraa and sfarrow for R image * fixed conda environment line * added r package to conda create env line * added r package to conda create env line * added conda forge channel * removed all conda packages that werent r packages * removed all r packages * reverted back to old package versions for all non r packages * added no plugins tag * just r packages with old version * removed the --no-plugins tag * addd back in nlraa and sfarrow * removed all package versions * changed order to installing Fgmutils then installing other packages * removed installation of sfarrow and nlraa packages * removed -y tag * added back in pinned updated versions for r packages * added nlraa and sfarrow back into R script install * upgraded libpq-dev to 13.17 * moved r-sf install * unupdated all non r packages * fixed syntax error * added first 5 updated packages * upgraded geopandas version and r and r-arrow versions * pinned package versions from pangeo notebook and rest are unpinned * commented out packages not in pangeos notebook * commented back in some packages * removed packages not in pangeo notebook and unpinned python version * updated jupyterlab pangeo versions to be from the packages.txt from pangeo notebook * commented back in some innocent packages * commented 3 packages back in * commented back in 3 packages * uncommented 3 packages * uncommented 3 packages * uncommented 3 packages * commented back out xcape * commented back in cython and geogif * commented out cython * commented in cython and out geogif * added geogif and _numpy_rc packages * flexible install for all pangeo notebook packages * added back in 3 problem packages while rest flexible installs * removed bug fix version for package installs * updated R packages without Fgmutils * updated libpq-dev * added back in Fgmutils package with verbose output command * unpinned r-stringr version * added r-stringi dependency * added icu to r dependencies * added tidyverse stringr stringi to R install * separated tidyverse stringi stringr install * added knitr roxygen2 selectr to install statement * added conda list to after conda installs * removed Fgmutils install * removed roxygen2 install and fixed conda list line * commented out basemap and xcape and pinned geogif >=0.1.4 * unpinned version for numpy and numba * only pangeo notebook stuff pinned * pinned all package versions from created workspace * upgraded jupyterlab 4.3.0 * isce3 image should more match pangeo notebook and couple updates to python image * removed pins for numba and numpy * made shared environment.yml match the package versions from pangeo notebook * unpinned python * unpinned lonboard * upgraded python image to have same versions as pangeo notebook * unpinned numpy to avoid dependency conflicts * unpinned lonboard to avoid dependency conflicts * removed the R channel * removed devemf package install * removed basemap version * removed version for r-rgdal * pinned versions for python image * pinned versions for Isce3 image * removed version for awscli * added geotrees requested packages * unpinned all versions for R yml * added packages from Sams environment.yml * adjusted formatting * pinned packages to avoid timeout error * added packages from updating workspace * moved packages that were actually pip packages * moved all added packages to be pip installs * reverted R image back to not trying to install lasR package * unpinned R versions * pinned versions in shared environment.yml * downgrading nodejs version to 22.6.0 * pinned R packages to updated versions * added geostrees packages and removed r channel/ r-devemf * removed print statements * removed extra line * Feature/add rhdf5 (#157) * added bioconductor-rhdf5 * pinned version * Bug/fix ssh info plugin 772 (#158) * uploaded new jupyter server extension for testing * changed version to new jupyter server extension released * updated the pangeo jupyter server extension as well * Building from maap base (#159) * building from maap base * building isce3 r pangeo from maap base * unpinned one version for apt install * trying to do apt installs from maap base * trying base image to be debian for maap base * added back unpinned package * building from ubuntu and adding debian repository * adding debian repo in a dif way * updated to be using image from Sujen * updated the maap base image to the one I generated * added conda init command * added file path of conda * updated the maap base image tags * removed conda init from opt/conda for isce3 * removed removing the defaults channel * changed to debian 11 for maap base * updated maap base image for R image * removed some version tags * updated maap base to actually be Sujens code with debian 11 * updated maapbase tag * pinned R package versions * updated from base image tags * removed adding the conda forge channel * increased algorithms extension version (#160) * Feature/UI updates (#161) * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Bug/fix tidyterra (#162) * removed install of BIOMASS and tidyterra and changed cforest to partykit * added libcoin and inum to install line * added libgcc and gcc installs * added symlink for libgcc library * changed from installing partykit to party * added extra conda list * moved activating bin/bash * trying to install old version of tidyterra * added more c compiler libraries * installing all R packages from the archives * added back in partykit install * now installing partykit from conda forge * pinned partykit version and removed unnecessary code * Feature/add lasr (#163) * unpinned all apt packages * env.yml from working conda env * added extra == for pip installs * removed stac-ipyleaflet * removed unnecessary packages * unpinned nodejs version * lasR install in R script * updates to maap base to try to install lasR * updates to maap base to try to install lasR * added the software-properties-common package * added ls * added gnupg install * tried installing from ubuntu * removed adding ubuntu unstable repo * fixed install line * fixed script run command * simplified r base image * updating maap base * adding ubuntugis channel in a dif way * adding ubuntugis channel in a dif way * removed Rscript line failing * updated ubuntu base image tag * adding suggested packages from email from Benedetta * removed installation of stac-ipyleaflet because it was failing * added r-irkernel as a package * trying to build from their suggested docker image * commented out making the projects folder * removed creating the projects directory for permission issues * added back in creating the projects directory * switching to root user * added user root before creating projects directory * tried to remove more frills from jupyterlab image * removed npm stuff * manually inserting lasR install * reverted back to mostly develop branch * merged develop * changed file path for lasR * corrected filepath for lasr * Bug/ssh fix (#164) * added print logs to jupyter server extension * made fix to user workspace management to public_ssh_key * added print statement of profile * testing fix getting account info from jupyter server extension * added more print statements * just testing my new jupyter server extension to see if that is deleting the PGT token * testing fix of adding optional proxy_ticket argument to maap-py * reverted injectKeyHandler back to not have print statments * updated package versions * changed to be installing tag for maap-py * updated maap-py version * increased version for libpq-dev * Feature/ext update (#166) * update version * env update * update ext * Bug/set pgt token (#167) * testing separating the inject SSH key and PGT functions * increased versions for user workspace and jupyter server extensions * Libpq dev update (#168) updated libpq-dev version * Chore/devfile metadata update (#165) updated version in devfiles * Maap base develop (#170) building all images from maap_base develop --------- Co-authored-by: Marjorie Lucas <47004511+marjo-luc@users.noreply.github.com>
grallewellyn
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Aug 13, 2025
* update version * env update * update ext
grallewellyn
added a commit
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Aug 27, 2025
* Bumped jupyter-server-ext version (#147) bump jl ext version * Feature/remove pygeos (#148) removed pygeos from all packages * Bump jupyter server ext (#150) increased the jupyter server extension version for the pangeo image * Chore/devfile metadata update (#149) updated release version from 4.1.0 to 4.1.1 * Remove environments json (#152) * removed setting environment env var and copying in file * added jupyter server extension for testing * uploaded new built jupyter server extension with returning what I want to print * jupyter server extension without using environments file * uploaded built wheel with getting host from parameter not environment variable * switched to using dps and maap-py updates * final working version for extension PRs * changed to point to new versions * Libpq dev update (#153) develop image is failing right now so upgrading libpq-dev from 13.16 to 13.17 * Libpq dev update (#154) upgraded libpq-dev * Feature/container url dropdown (#155) * first attempt of container urls being a dropdown * fixed bug with dropdown not changing * only one call to getWorkspaces * added env vars to devfiles and edited dockerimage_path name * updated the algorithms extension version * added DEFAULT_DOCKERFILE_PATH as env variable * added 2nd --build-arg tag * corrected the dps base image url * added print statements to jupyter server extension * reverted back to old jupyter server extension right after removing need for environments.json to see if this fixes the problem * reverted changes for container url dropdown branch * corrected default and base image to be switched back * Feature/update packages (#156) * updated packages for pangeo image * removed versions from s3fs and boto3 * updating isce3 packages * removed some package versions * updated hdf5 * removed package versions and gdal * removed another version * removed all package versions for isce3 image * updated all packages * unpinned some package versions and removed pygeos * unpinned some more package versions * unpinned more package versions and removed Fgmutils install * unpinned lonboard version for r image * pinned all versions from built images * updated package versions for pangeo image to match pangeo notebook * unpinned some package versions * unpinned more package versions * unpinned almost all versions * pinned some more package versions * pinned more packages * unpinned xcube * converted back to prevous pinned packages * added pins back in for R and added Fgmutils to install * not installing conda packages and nlraa and sfarrow for R image * fixed conda environment line * added r package to conda create env line * added r package to conda create env line * added conda forge channel * removed all conda packages that werent r packages * removed all r packages * reverted back to old package versions for all non r packages * added no plugins tag * just r packages with old version * removed the --no-plugins tag * addd back in nlraa and sfarrow * removed all package versions * changed order to installing Fgmutils then installing other packages * removed installation of sfarrow and nlraa packages * removed -y tag * added back in pinned updated versions for r packages * added nlraa and sfarrow back into R script install * upgraded libpq-dev to 13.17 * moved r-sf install * unupdated all non r packages * fixed syntax error * added first 5 updated packages * upgraded geopandas version and r and r-arrow versions * pinned package versions from pangeo notebook and rest are unpinned * commented out packages not in pangeos notebook * commented back in some packages * removed packages not in pangeo notebook and unpinned python version * updated jupyterlab pangeo versions to be from the packages.txt from pangeo notebook * commented back in some innocent packages * commented 3 packages back in * commented back in 3 packages * uncommented 3 packages * uncommented 3 packages * uncommented 3 packages * commented back out xcape * commented back in cython and geogif * commented out cython * commented in cython and out geogif * added geogif and _numpy_rc packages * flexible install for all pangeo notebook packages * added back in 3 problem packages while rest flexible installs * removed bug fix version for package installs * updated R packages without Fgmutils * updated libpq-dev * added back in Fgmutils package with verbose output command * unpinned r-stringr version * added r-stringi dependency * added icu to r dependencies * added tidyverse stringr stringi to R install * separated tidyverse stringi stringr install * added knitr roxygen2 selectr to install statement * added conda list to after conda installs * removed Fgmutils install * removed roxygen2 install and fixed conda list line * commented out basemap and xcape and pinned geogif >=0.1.4 * unpinned version for numpy and numba * only pangeo notebook stuff pinned * pinned all package versions from created workspace * upgraded jupyterlab 4.3.0 * isce3 image should more match pangeo notebook and couple updates to python image * removed pins for numba and numpy * made shared environment.yml match the package versions from pangeo notebook * unpinned python * unpinned lonboard * upgraded python image to have same versions as pangeo notebook * unpinned numpy to avoid dependency conflicts * unpinned lonboard to avoid dependency conflicts * removed the R channel * removed devemf package install * removed basemap version * removed version for r-rgdal * pinned versions for python image * pinned versions for Isce3 image * removed version for awscli * added geotrees requested packages * unpinned all versions for R yml * added packages from Sams environment.yml * adjusted formatting * pinned packages to avoid timeout error * added packages from updating workspace * moved packages that were actually pip packages * moved all added packages to be pip installs * reverted R image back to not trying to install lasR package * unpinned R versions * pinned versions in shared environment.yml * downgrading nodejs version to 22.6.0 * pinned R packages to updated versions * added geostrees packages and removed r channel/ r-devemf * removed print statements * removed extra line * Feature/add rhdf5 (#157) * added bioconductor-rhdf5 * pinned version * Bug/fix ssh info plugin 772 (#158) * uploaded new jupyter server extension for testing * changed version to new jupyter server extension released * updated the pangeo jupyter server extension as well * Building from maap base (#159) * building from maap base * building isce3 r pangeo from maap base * unpinned one version for apt install * trying to do apt installs from maap base * trying base image to be debian for maap base * added back unpinned package * building from ubuntu and adding debian repository * adding debian repo in a dif way * updated to be using image from Sujen * updated the maap base image to the one I generated * added conda init command * added file path of conda * updated the maap base image tags * removed conda init from opt/conda for isce3 * removed removing the defaults channel * changed to debian 11 for maap base * updated maap base image for R image * removed some version tags * updated maap base to actually be Sujens code with debian 11 * updated maapbase tag * pinned R package versions * updated from base image tags * removed adding the conda forge channel * increased algorithms extension version (#160) * Feature/UI updates (#161) * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Bug/fix tidyterra (#162) * removed install of BIOMASS and tidyterra and changed cforest to partykit * added libcoin and inum to install line * added libgcc and gcc installs * added symlink for libgcc library * changed from installing partykit to party * added extra conda list * moved activating bin/bash * trying to install old version of tidyterra * added more c compiler libraries * installing all R packages from the archives * added back in partykit install * now installing partykit from conda forge * pinned partykit version and removed unnecessary code * Feature/add lasr (#163) * unpinned all apt packages * env.yml from working conda env * added extra == for pip installs * removed stac-ipyleaflet * removed unnecessary packages * unpinned nodejs version * lasR install in R script * updates to maap base to try to install lasR * updates to maap base to try to install lasR * added the software-properties-common package * added ls * added gnupg install * tried installing from ubuntu * removed adding ubuntu unstable repo * fixed install line * fixed script run command * simplified r base image * updating maap base * adding ubuntugis channel in a dif way * adding ubuntugis channel in a dif way * removed Rscript line failing * updated ubuntu base image tag * adding suggested packages from email from Benedetta * removed installation of stac-ipyleaflet because it was failing * added r-irkernel as a package * trying to build from their suggested docker image * commented out making the projects folder * removed creating the projects directory for permission issues * added back in creating the projects directory * switching to root user * added user root before creating projects directory * tried to remove more frills from jupyterlab image * removed npm stuff * manually inserting lasR install * reverted back to mostly develop branch * merged develop * changed file path for lasR * corrected filepath for lasr * Bug/ssh fix (#164) * added print logs to jupyter server extension * made fix to user workspace management to public_ssh_key * added print statement of profile * testing fix getting account info from jupyter server extension * added more print statements * just testing my new jupyter server extension to see if that is deleting the PGT token * testing fix of adding optional proxy_ticket argument to maap-py * reverted injectKeyHandler back to not have print statments * updated package versions * changed to be installing tag for maap-py * updated maap-py version * increased version for libpq-dev * Feature/ext update (#166) * update version * env update * update ext * Bug/set pgt token (#167) * testing separating the inject SSH key and PGT functions * increased versions for user workspace and jupyter server extensions * Libpq dev update (#168) updated libpq-dev version * Chore/devfile metadata update (#165) updated version in devfiles * Maap base develop (#170) building all images from maap_base develop --------- Co-authored-by: Marjorie Lucas <47004511+marjo-luc@users.noreply.github.com>
grallewellyn
added a commit
that referenced
this pull request
Dec 9, 2025
* Develop into main (#169) (#178) * Bumped jupyter-server-ext version (#147) bump jl ext version * Feature/remove pygeos (#148) removed pygeos from all packages * Bump jupyter server ext (#150) increased the jupyter server extension version for the pangeo image * Chore/devfile metadata update (#149) updated release version from 4.1.0 to 4.1.1 * Remove environments json (#152) * removed setting environment env var and copying in file * added jupyter server extension for testing * uploaded new built jupyter server extension with returning what I want to print * jupyter server extension without using environments file * uploaded built wheel with getting host from parameter not environment variable * switched to using dps and maap-py updates * final working version for extension PRs * changed to point to new versions * Libpq dev update (#153) develop image is failing right now so upgrading libpq-dev from 13.16 to 13.17 * Libpq dev update (#154) upgraded libpq-dev * Feature/container url dropdown (#155) * first attempt of container urls being a dropdown * fixed bug with dropdown not changing * only one call to getWorkspaces * added env vars to devfiles and edited dockerimage_path name * updated the algorithms extension version * added DEFAULT_DOCKERFILE_PATH as env variable * added 2nd --build-arg tag * corrected the dps base image url * added print statements to jupyter server extension * reverted back to old jupyter server extension right after removing need for environments.json to see if this fixes the problem * reverted changes for container url dropdown branch * corrected default and base image to be switched back * Feature/update packages (#156) * updated packages for pangeo image * removed versions from s3fs and boto3 * updating isce3 packages * removed some package versions * updated hdf5 * removed package versions and gdal * removed another version * removed all package versions for isce3 image * updated all packages * unpinned some package versions and removed pygeos * unpinned some more package versions * unpinned more package versions and removed Fgmutils install * unpinned lonboard version for r image * pinned all versions from built images * updated package versions for pangeo image to match pangeo notebook * unpinned some package versions * unpinned more package versions * unpinned almost all versions * pinned some more package versions * pinned more packages * unpinned xcube * converted back to prevous pinned packages * added pins back in for R and added Fgmutils to install * not installing conda packages and nlraa and sfarrow for R image * fixed conda environment line * added r package to conda create env line * added r package to conda create env line * added conda forge channel * removed all conda packages that werent r packages * removed all r packages * reverted back to old package versions for all non r packages * added no plugins tag * just r packages with old version * removed the --no-plugins tag * addd back in nlraa and sfarrow * removed all package versions * changed order to installing Fgmutils then installing other packages * removed installation of sfarrow and nlraa packages * removed -y tag * added back in pinned updated versions for r packages * added nlraa and sfarrow back into R script install * upgraded libpq-dev to 13.17 * moved r-sf install * unupdated all non r packages * fixed syntax error * added first 5 updated packages * upgraded geopandas version and r and r-arrow versions * pinned package versions from pangeo notebook and rest are unpinned * commented out packages not in pangeos notebook * commented back in some packages * removed packages not in pangeo notebook and unpinned python version * updated jupyterlab pangeo versions to be from the packages.txt from pangeo notebook * commented back in some innocent packages * commented 3 packages back in * commented back in 3 packages * uncommented 3 packages * uncommented 3 packages * uncommented 3 packages * commented back out xcape * commented back in cython and geogif * commented out cython * commented in cython and out geogif * added geogif and _numpy_rc packages * flexible install for all pangeo notebook packages * added back in 3 problem packages while rest flexible installs * removed bug fix version for package installs * updated R packages without Fgmutils * updated libpq-dev * added back in Fgmutils package with verbose output command * unpinned r-stringr version * added r-stringi dependency * added icu to r dependencies * added tidyverse stringr stringi to R install * separated tidyverse stringi stringr install * added knitr roxygen2 selectr to install statement * added conda list to after conda installs * removed Fgmutils install * removed roxygen2 install and fixed conda list line * commented out basemap and xcape and pinned geogif >=0.1.4 * unpinned version for numpy and numba * only pangeo notebook stuff pinned * pinned all package versions from created workspace * upgraded jupyterlab 4.3.0 * isce3 image should more match pangeo notebook and couple updates to python image * removed pins for numba and numpy * made shared environment.yml match the package versions from pangeo notebook * unpinned python * unpinned lonboard * upgraded python image to have same versions as pangeo notebook * unpinned numpy to avoid dependency conflicts * unpinned lonboard to avoid dependency conflicts * removed the R channel * removed devemf package install * removed basemap version * removed version for r-rgdal * pinned versions for python image * pinned versions for Isce3 image * removed version for awscli * added geotrees requested packages * unpinned all versions for R yml * added packages from Sams environment.yml * adjusted formatting * pinned packages to avoid timeout error * added packages from updating workspace * moved packages that were actually pip packages * moved all added packages to be pip installs * reverted R image back to not trying to install lasR package * unpinned R versions * pinned versions in shared environment.yml * downgrading nodejs version to 22.6.0 * pinned R packages to updated versions * added geostrees packages and removed r channel/ r-devemf * removed print statements * removed extra line * Feature/add rhdf5 (#157) * added bioconductor-rhdf5 * pinned version * Bug/fix ssh info plugin 772 (#158) * uploaded new jupyter server extension for testing * changed version to new jupyter server extension released * updated the pangeo jupyter server extension as well * Building from maap base (#159) * building from maap base * building isce3 r pangeo from maap base * unpinned one version for apt install * trying to do apt installs from maap base * trying base image to be debian for maap base * added back unpinned package * building from ubuntu and adding debian repository * adding debian repo in a dif way * updated to be using image from Sujen * updated the maap base image to the one I generated * added conda init command * added file path of conda * updated the maap base image tags * removed conda init from opt/conda for isce3 * removed removing the defaults channel * changed to debian 11 for maap base * updated maap base image for R image * removed some version tags * updated maap base to actually be Sujens code with debian 11 * updated maapbase tag * pinned R package versions * updated from base image tags * removed adding the conda forge channel * increased algorithms extension version (#160) * Feature/UI updates (#161) * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Bug/fix tidyterra (#162) * removed install of BIOMASS and tidyterra and changed cforest to partykit * added libcoin and inum to install line * added libgcc and gcc installs * added symlink for libgcc library * changed from installing partykit to party * added extra conda list * moved activating bin/bash * trying to install old version of tidyterra * added more c compiler libraries * installing all R packages from the archives * added back in partykit install * now installing partykit from conda forge * pinned partykit version and removed unnecessary code * Feature/add lasr (#163) * unpinned all apt packages * env.yml from working conda env * added extra == for pip installs * removed stac-ipyleaflet * removed unnecessary packages * unpinned nodejs version * lasR install in R script * updates to maap base to try to install lasR * updates to maap base to try to install lasR * added the software-properties-common package * added ls * added gnupg install * tried installing from ubuntu * removed adding ubuntu unstable repo * fixed install line * fixed script run command * simplified r base image * updating maap base * adding ubuntugis channel in a dif way * adding ubuntugis channel in a dif way * removed Rscript line failing * updated ubuntu base image tag * adding suggested packages from email from Benedetta * removed installation of stac-ipyleaflet because it was failing * added r-irkernel as a package * trying to build from their suggested docker image * commented out making the projects folder * removed creating the projects directory for permission issues * added back in creating the projects directory * switching to root user * added user root before creating projects directory * tried to remove more frills from jupyterlab image * removed npm stuff * manually inserting lasR install * reverted back to mostly develop branch * merged develop * changed file path for lasR * corrected filepath for lasr * Bug/ssh fix (#164) * added print logs to jupyter server extension * made fix to user workspace management to public_ssh_key * added print statement of profile * testing fix getting account info from jupyter server extension * added more print statements * just testing my new jupyter server extension to see if that is deleting the PGT token * testing fix of adding optional proxy_ticket argument to maap-py * reverted injectKeyHandler back to not have print statments * updated package versions * changed to be installing tag for maap-py * updated maap-py version * increased version for libpq-dev * Feature/ext update (#166) * update version * env update * update ext * Bug/set pgt token (#167) * testing separating the inject SSH key and PGT functions * increased versions for user workspace and jupyter server extensions * Libpq dev update (#168) updated libpq-dev version * Chore/devfile metadata update (#165) updated version in devfiles * Maap base develop (#170) building all images from maap_base develop --------- Co-authored-by: Marjorie Lucas <47004511+marjo-luc@users.noreply.github.com> * reapplied recent develop updates to fix repo (#179) * reapplied recent develop updates to fix repo * installing lasr normally with conda * build of lasr with correct gdal * Feature/2i2c images (#182) * sample Marjorie 2i2c image is working * pangeo 2i2c image building and loading on 2i2c but still has problems * enabled pangeo conda env by default now * giving up with Dockerfile approach and trying to set /projects to the default * isce3 building, need to work on R more * working r image in 2i2c * giving up installing isce3 from pangeo notebook * attempt with isce3 being installed from ubuntu and R image building but installing R packages in wrong directory * beginning of v5.0.0 but want isce3 to be more updated at the risk of removing packages. Current isce3 with less package builds * successful build * building * build successful * pinned and commented out packages * removed /projects dir creation since new default is /home/jovyan * added env vars, removed stac ipyleaflet, added nodejs, pinned packages * added duckdb * attempt to pin R packages, but keeps failing * unpinned R package versions and added script for reading package versions * updated all package versions --------- Co-authored-by: Marjorie Lucas <47004511+marjo-luc@users.noreply.github.com>
grallewellyn
added a commit
that referenced
this pull request
Dec 10, 2025
* Develop into main (#169) (#178) * Bumped jupyter-server-ext version (#147) bump jl ext version * Feature/remove pygeos (#148) removed pygeos from all packages * Bump jupyter server ext (#150) increased the jupyter server extension version for the pangeo image * Chore/devfile metadata update (#149) updated release version from 4.1.0 to 4.1.1 * Remove environments json (#152) * removed setting environment env var and copying in file * added jupyter server extension for testing * uploaded new built jupyter server extension with returning what I want to print * jupyter server extension without using environments file * uploaded built wheel with getting host from parameter not environment variable * switched to using dps and maap-py updates * final working version for extension PRs * changed to point to new versions * Libpq dev update (#153) develop image is failing right now so upgrading libpq-dev from 13.16 to 13.17 * Libpq dev update (#154) upgraded libpq-dev * Feature/container url dropdown (#155) * first attempt of container urls being a dropdown * fixed bug with dropdown not changing * only one call to getWorkspaces * added env vars to devfiles and edited dockerimage_path name * updated the algorithms extension version * added DEFAULT_DOCKERFILE_PATH as env variable * added 2nd --build-arg tag * corrected the dps base image url * added print statements to jupyter server extension * reverted back to old jupyter server extension right after removing need for environments.json to see if this fixes the problem * reverted changes for container url dropdown branch * corrected default and base image to be switched back * Feature/update packages (#156) * updated packages for pangeo image * removed versions from s3fs and boto3 * updating isce3 packages * removed some package versions * updated hdf5 * removed package versions and gdal * removed another version * removed all package versions for isce3 image * updated all packages * unpinned some package versions and removed pygeos * unpinned some more package versions * unpinned more package versions and removed Fgmutils install * unpinned lonboard version for r image * pinned all versions from built images * updated package versions for pangeo image to match pangeo notebook * unpinned some package versions * unpinned more package versions * unpinned almost all versions * pinned some more package versions * pinned more packages * unpinned xcube * converted back to prevous pinned packages * added pins back in for R and added Fgmutils to install * not installing conda packages and nlraa and sfarrow for R image * fixed conda environment line * added r package to conda create env line * added r package to conda create env line * added conda forge channel * removed all conda packages that werent r packages * removed all r packages * reverted back to old package versions for all non r packages * added no plugins tag * just r packages with old version * removed the --no-plugins tag * addd back in nlraa and sfarrow * removed all package versions * changed order to installing Fgmutils then installing other packages * removed installation of sfarrow and nlraa packages * removed -y tag * added back in pinned updated versions for r packages * added nlraa and sfarrow back into R script install * upgraded libpq-dev to 13.17 * moved r-sf install * unupdated all non r packages * fixed syntax error * added first 5 updated packages * upgraded geopandas version and r and r-arrow versions * pinned package versions from pangeo notebook and rest are unpinned * commented out packages not in pangeos notebook * commented back in some packages * removed packages not in pangeo notebook and unpinned python version * updated jupyterlab pangeo versions to be from the packages.txt from pangeo notebook * commented back in some innocent packages * commented 3 packages back in * commented back in 3 packages * uncommented 3 packages * uncommented 3 packages * uncommented 3 packages * commented back out xcape * commented back in cython and geogif * commented out cython * commented in cython and out geogif * added geogif and _numpy_rc packages * flexible install for all pangeo notebook packages * added back in 3 problem packages while rest flexible installs * removed bug fix version for package installs * updated R packages without Fgmutils * updated libpq-dev * added back in Fgmutils package with verbose output command * unpinned r-stringr version * added r-stringi dependency * added icu to r dependencies * added tidyverse stringr stringi to R install * separated tidyverse stringi stringr install * added knitr roxygen2 selectr to install statement * added conda list to after conda installs * removed Fgmutils install * removed roxygen2 install and fixed conda list line * commented out basemap and xcape and pinned geogif >=0.1.4 * unpinned version for numpy and numba * only pangeo notebook stuff pinned * pinned all package versions from created workspace * upgraded jupyterlab 4.3.0 * isce3 image should more match pangeo notebook and couple updates to python image * removed pins for numba and numpy * made shared environment.yml match the package versions from pangeo notebook * unpinned python * unpinned lonboard * upgraded python image to have same versions as pangeo notebook * unpinned numpy to avoid dependency conflicts * unpinned lonboard to avoid dependency conflicts * removed the R channel * removed devemf package install * removed basemap version * removed version for r-rgdal * pinned versions for python image * pinned versions for Isce3 image * removed version for awscli * added geotrees requested packages * unpinned all versions for R yml * added packages from Sams environment.yml * adjusted formatting * pinned packages to avoid timeout error * added packages from updating workspace * moved packages that were actually pip packages * moved all added packages to be pip installs * reverted R image back to not trying to install lasR package * unpinned R versions * pinned versions in shared environment.yml * downgrading nodejs version to 22.6.0 * pinned R packages to updated versions * added geostrees packages and removed r channel/ r-devemf * removed print statements * removed extra line * Feature/add rhdf5 (#157) * added bioconductor-rhdf5 * pinned version * Bug/fix ssh info plugin 772 (#158) * uploaded new jupyter server extension for testing * changed version to new jupyter server extension released * updated the pangeo jupyter server extension as well * Building from maap base (#159) * building from maap base * building isce3 r pangeo from maap base * unpinned one version for apt install * trying to do apt installs from maap base * trying base image to be debian for maap base * added back unpinned package * building from ubuntu and adding debian repository * adding debian repo in a dif way * updated to be using image from Sujen * updated the maap base image to the one I generated * added conda init command * added file path of conda * updated the maap base image tags * removed conda init from opt/conda for isce3 * removed removing the defaults channel * changed to debian 11 for maap base * updated maap base image for R image * removed some version tags * updated maap base to actually be Sujens code with debian 11 * updated maapbase tag * pinned R package versions * updated from base image tags * removed adding the conda forge channel * increased algorithms extension version (#160) * Feature/UI updates (#161) * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Update environment.yml * Bug/fix tidyterra (#162) * removed install of BIOMASS and tidyterra and changed cforest to partykit * added libcoin and inum to install line * added libgcc and gcc installs * added symlink for libgcc library * changed from installing partykit to party * added extra conda list * moved activating bin/bash * trying to install old version of tidyterra * added more c compiler libraries * installing all R packages from the archives * added back in partykit install * now installing partykit from conda forge * pinned partykit version and removed unnecessary code * Feature/add lasr (#163) * unpinned all apt packages * env.yml from working conda env * added extra == for pip installs * removed stac-ipyleaflet * removed unnecessary packages * unpinned nodejs version * lasR install in R script * updates to maap base to try to install lasR * updates to maap base to try to install lasR * added the software-properties-common package * added ls * added gnupg install * tried installing from ubuntu * removed adding ubuntu unstable repo * fixed install line * fixed script run command * simplified r base image * updating maap base * adding ubuntugis channel in a dif way * adding ubuntugis channel in a dif way * removed Rscript line failing * updated ubuntu base image tag * adding suggested packages from email from Benedetta * removed installation of stac-ipyleaflet because it was failing * added r-irkernel as a package * trying to build from their suggested docker image * commented out making the projects folder * removed creating the projects directory for permission issues * added back in creating the projects directory * switching to root user * added user root before creating projects directory * tried to remove more frills from jupyterlab image * removed npm stuff * manually inserting lasR install * reverted back to mostly develop branch * merged develop * changed file path for lasR * corrected filepath for lasr * Bug/ssh fix (#164) * added print logs to jupyter server extension * made fix to user workspace management to public_ssh_key * added print statement of profile * testing fix getting account info from jupyter server extension * added more print statements * just testing my new jupyter server extension to see if that is deleting the PGT token * testing fix of adding optional proxy_ticket argument to maap-py * reverted injectKeyHandler back to not have print statments * updated package versions * changed to be installing tag for maap-py * updated maap-py version * increased version for libpq-dev * Feature/ext update (#166) * update version * env update * update ext * Bug/set pgt token (#167) * testing separating the inject SSH key and PGT functions * increased versions for user workspace and jupyter server extensions * Libpq dev update (#168) updated libpq-dev version * Chore/devfile metadata update (#165) updated version in devfiles * Maap base develop (#170) building all images from maap_base develop --------- Co-authored-by: Marjorie Lucas <47004511+marjo-luc@users.noreply.github.com> * reapplied recent develop updates to fix repo (#179) * reapplied recent develop updates to fix repo * installing lasr normally with conda * build of lasr with correct gdal * Feature/2i2c images (#182) * sample Marjorie 2i2c image is working * pangeo 2i2c image building and loading on 2i2c but still has problems * enabled pangeo conda env by default now * giving up with Dockerfile approach and trying to set /projects to the default * isce3 building, need to work on R more * working r image in 2i2c * giving up installing isce3 from pangeo notebook * attempt with isce3 being installed from ubuntu and R image building but installing R packages in wrong directory * beginning of v5.0.0 but want isce3 to be more updated at the risk of removing packages. Current isce3 with less package builds * successful build * building * build successful * pinned and commented out packages * removed /projects dir creation since new default is /home/jovyan * added env vars, removed stac ipyleaflet, added nodejs, pinned packages * added duckdb * attempt to pin R packages, but keeps failing * unpinned R package versions and added script for reading package versions * updated all package versions * added rustac (#184) --------- Co-authored-by: Marjorie Lucas <47004511+marjo-luc@users.noreply.github.com>
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Updated version of maap-algorithms-jupyter-extension to 0.3.10