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bstfun 0.3.0

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@ddsjoberg ddsjoberg released this 08 Nov 23:12
  • Function add_cuminc_risktables() now allows for 3 groups. Makes colors consistent between labels and estimates. Removed "Number at risk" label and places a label ", n:" next to each strata name.

  • Migrated the H.O.T. project templates from {hotfun} to {bstfun}.

  • Added new function clean_mrn() to clean and check consistency of MRN columns.

  • Added new function set_derived_variables() that imports variable labels from an excel file and applies the labels to the data frame.

  • Added new function count_map() to aid in checking variable derivations.

  • Added new function count_na() to assess variable missing patterns.

  • Added new function get_mode() to obtain the mode of a variable.

  • Added new function list_labels() to obtain a named list of column names and their labels.

  • Added new function assign_timepoint() to aid in selecting observations at various follow-up times, e.g. selecting the 6 and 12 month lab result from a long data set of all labs.

  • Added new function add_splines().

  • Added new functions for calculating eGFR: egfr_mdrd() and egfr_ckdepi().

  • Migrated H.O.T. project creation functions from the hotfun package.

  • Added two functions for calculating AUC based on the distribution of a variable.

  • Removed use of deprecated function in tbl_likert().

  • Added new function followup_time() that reports the amount of follow-up among censored patients.

  • Added new function list_labels() to extract the variable labels from a data frame.

  • Added new function rm_logs() to delete logs created from submitting jobs to the HPCC.