Add descriptions GUI#61
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mschwoer
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Feb 24, 2025
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| The data needs to be exported in the **normal long** format as .tsv or .csv file. | ||
| [Download example data](https://datashare.biochem.mpg.de/s/m1qR1hbz7lOyIzn/download) |
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is this the shared data share?
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this is the alphaquant data share, where I also have the paper data
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should we move at least the example data to the shared one?
… add_descriptions_GUI
mschwoer
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Feb 27, 2025
| width=700, | ||
| sizing_mode='fixed', | ||
| description='Enter the full path to your input file from MaxQuant, Spectronaut, or DIA-NN' | ||
| description=gui_textfields.Descriptions.tooltips['file_input'] |
| **DIA-NN:** | ||
| Provide the path to the DIANN "report.tsv" output table. The samplemap.tsv file must map the Run column. | ||
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| **AlphaDIA:** |
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shall we put AlphaDIA first?
| mkdir -p ${CONTENTS_FOLDER}/Frameworks/alphamap/data/ | ||
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| #### | ||
| ####Download all AlphaMap FASTA and CSV files from GitHub, which are needed for the further analyses. There is a lot of error checking to ensure that the files get actually added during the build |
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for windows, this is not required?
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windows does not have the connection issues, so one can download the required files for alphamap. However, it would be nice to align this, I opened a separate PR for this
#71
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Add instructions and test data download options to GUI