Feature/extra endpoints#3
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…/delete/metadata - Add Entities resource with query endpoint - Add datasets.get_by_id, datasets.query, datasets.download_table_url - Add uploads.query, uploads.delete, uploads.get_sample_metadata - Replace uploads.get_by_name with query-based approach - Replace datasets.list_by_upload to use query endpoint - Make experiment_design optional on upload create - Add error_message field to Dataset model - Pass **kwargs through base_client for allow_redirects support - Remove stale get_experiment_by_name example
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…rebuild skill Implements the two missing CLI modules: - api.py: MDClient facade wrapping md-python SDK (V2 primary, V1 fallback) for all 40+ operations the CLI needs (experiments, datasets, analysis, tables, workspaces, viz, enrichment, entities) - config.py: persistent credential storage (~/.md-cli/config.json) with env var override support New CLI commands leveraging Aaron's PR MassDynamics#3 V2 endpoints: - md experiments query (search/filter uploads) - md experiments delete (V2) - md experiments metadata (sample metadata retrieval) - md datasets query (cross-upload dataset search) - md datasets download-url (presigned S3 URLs) - md entities query (cross-dataset protein/gene search) Updated SKILL.md with V2 command documentation. Rebuilt dist/md-platform.skill (40KB, self-contained). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
webwebb56
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…rebuild skill Implements the two missing CLI modules: - api.py: MDClient facade wrapping md-python SDK (V2 primary, V1 fallback) for all 40+ operations the CLI needs (experiments, datasets, analysis, tables, workspaces, viz, enrichment, entities) - config.py: persistent credential storage (~/.md-cli/config.json) with env var override support New CLI commands leveraging Aaron's PR MassDynamics#3 V2 endpoints: - md experiments query (search/filter uploads) - md experiments delete (V2) - md experiments metadata (sample metadata retrieval) - md datasets query (cross-upload dataset search) - md datasets download-url (presigned S3 URLs) - md entities query (cross-dataset protein/gene search) Updated SKILL.md with V2 command documentation. Rebuilt dist/md-platform.skill (40KB, self-contained). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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