ViPER v1.1

• General updates
• Set default options for --cluster-coverand --cluster-identityat 85 and 95, respectively.

New options:

• You can use --keep-reads to keep the original read files in place and not move them anymore to the output directory.
• Skip the trimming of reads for quality and adapters with --skip-trimming, useful if you already trimmed your reads with other software. -u | --unpaired can be used to optionally give an unpaired read file if you skip trimming.
• -n | --name lets you specify a prefix for the output files.