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updated to Dockerfile_dev to make rxd work #60

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Merged
tarelli merged 2 commits into from
Jul 11, 2018
Merged

updated to Dockerfile_dev to make rxd work #60

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bd41a2f
updated to Dockerfile_dev to make rxd work
salvadord Jul 11, 2018
b3f12fe
Using the tagged version
tarelli Jul 11, 2018
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25 changes: 9 additions & 16 deletions Dockerfile_dev
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Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
FROM jupyter/base-notebook:eb70bcf1a292
USER root

ARG netpyneuiBranch=development
ENV netpyneuiBranch=${netpyneuiBranch}
ARG netpyneuiBranch=development
ENV netpyneuiBranch=${netpyneuiBranch}
RUN echo "$netpyneuiBranch";

RUN apt-get -qq update
Expand All @@ -13,7 +13,7 @@ RUN apt-get install -y \
g++ \
build-essential \
libncurses-dev \
python \
python2.7 \
libpython-dev \
cython \
libx11-dev \
Expand All @@ -24,28 +24,21 @@ RUN apt-get install -y \
libtool \
libxext-dev \
libncurses-dev \
python3-dev \
python2.7-dev \
xfonts-100dpi \
cython3 \
libopenmpi-dev \
python3-scipy \
python2.7-scipy \
make \
zlib1g-dev \
unzip \
vim \
libpng-dev

# Install latest iv and NEURON
RUN git clone http://github.com/neuronsimulator/iv
RUN git clone --branch 7.6.1crxd https://github.com/adamjhn/nrn.git
WORKDIR iv
RUN git clone --branch 7.6.1crxd https://github.com/adamjhn/nrn.git
WORKDIR nrn
RUN ./build.sh
RUN ./configure --prefix="/home/jovyan/work/iv/"
RUN make --silent -j4
RUN make --silent install -j4
WORKDIR ../nrn
RUN ./build.sh
RUN ./configure --with-nrnpython=python2 --with-paranrn --prefix="/home/jovyan/work/nrn/" --with-iv="/home/jovyan/work/iv/"
RUN ./configure --without-x --with-nrnpython=python2 --without-paranrn --prefix="/home/jovyan/work/nrn/" --without-iv
RUN make --silent -j4
RUN make --silent install -j4

Expand All @@ -72,4 +65,4 @@ RUN /bin/bash -c "source activate snakes && exec python install.py branch $netpy
WORKDIR /home/jovyan
RUN git clone https://github.com/Neurosim-lab/netpyne_workspace
WORKDIR /home/jovyan/netpyne_workspace
CMD /bin/bash -c "source activate snakes && exec jupyter notebook --debug --NotebookApp.default_url=/geppetto --NotebookApp.token=''"
CMD /bin/bash -c "source activate snakes && exec jupyter notebook --debug --NotebookApp.default_url=/geppetto --NotebookApp.token=''"