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Merged
ddelpiano merged 4 commits into from
Apr 21, 2023
Merged

Feature/netpyne 139 #718

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b322ad4
netpyne-139 Fix missing steps in tutorial 2
aranega Apr 21, 2023
1aca18d
netpyne-140 Change path to .mod and .hoc for tutorial 2
aranega Apr 21, 2023
94fce62
netpyne-141 Fix flow for folder selection
aranega Apr 21, 2023
a6167f3
netpyne-141 Fix end of the tutorial 2
aranega Apr 21, 2023
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3 changes: 3 additions & 0 deletions webapp/components/topbar/dialogs/ImportCellParams.js
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Original file line number Diff line number Diff line change
Expand Up @@ -114,6 +114,7 @@ class ImportCellParams extends React.Component {
>
<Box mb={1}>
<TextField
id="importCellParamsRuleLabel"
variant="filled"
value={label}
fullWidth
Expand All @@ -124,6 +125,7 @@ class ImportCellParams extends React.Component {

<NetPyNEField id="netParams.importCellParams.cellName" className={classes.textField}>
<TextField
id="importCellParamsCellName"
variant="filled"
fullWidth
value={cellName}
Expand Down Expand Up @@ -200,6 +202,7 @@ class ImportCellParams extends React.Component {
<Grid item>
<NetPyNEField id="netParams.importCellParams.compileMod">
<Checkbox
id="importCellParamsCompileMod"
fullWidth
noBackground
checked={compileMod}
Expand Down
245 changes: 214 additions & 31 deletions webapp/redux/reducers/data/tutorial2_steps.js
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Original file line number Diff line number Diff line change
Expand Up @@ -23,47 +23,84 @@ const tutorial2_steps = [
</div>
)
},
// Import cell values modification
{
target: '#importCellParamsFileName',
target: '#importCellParamsRuleLabel',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Change the cell rule label to "PTcell"</p>
</div>
)
},
{
target: '#importCellParamsCellName',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Change the template/cell name to "PTcell"</p>
</div>
)
},
{
target: '.fa-folder',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Click on the folder icon to select the template:</p>
<p> NetPyNE tutorials &gt; netpyne_workspace-master</p>
<p> NetPyNE-UI &gt; workspace</p>
<p> &gt; cells &gt; PTcells.hoc</p>
</div>
)
},
// {
// target: '#TreeContainerCutting_component',
// content: (
// <div>
// <p>Select "NetPyNE tutorials &gt; netpyne_workspace-master &gt; cells &gt; PTcells.hoc".</p>
// </div>
// )
// },
{
target: '#importCellParamsModFolder',
target: '#browserAccept',
content: (
<div>
<p>Select "NetPyNE-UI &gt; workspace &gt; cells &gt; PTcells.hoc"</p>
<p>and click on "Select"</p>
</div>
)
},
{
target: '.fa-folder',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Click on the folder icon to select the folder containing the "mod" file:</p>
<p>"NetPyNE tutorials &gt; netpyne_workspace-master &gt; mod</p>
<p>"NetPyNE-UI &gt; workspace &gt; mod</p>
</div>
),
collectionIndex: 1
},
{
target: '#browserAccept',
content: (
<div>
<p>Select "NetPyNE-UI &gt; workspace &gt; mod"</p>
<p>and click on "Select"</p>
</div>
)
},
{
target: '#importCellParamsCompileMod',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Activate the compilation of mod files</p>
</div>
)
},
// {
// target: '#TreeContainerCutting_component',
// content: (
// <div>
// <p>Select "NetPyNE tutorials &gt; netpyne_workspace-master &gt; mod".</p>
// </div>
// )
// },
{
target: '#appBarPerformActionButton',
title: (
Expand Down Expand Up @@ -108,62 +145,208 @@ const tutorial2_steps = [
</div>
)
},
// New cell import
{
target: '#selectCellButton',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>We will create first a new cell using a cell template.</p>
<p>Click on the "+" to create a new cell.</p>
</div>
)
},
{
target: '#fromTemplateCellTemplate',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Select "Import cell template from file..."</p>
</div>
)
},
// Template cell parameter modification
{
target: '#importCellParamsRuleLabel',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Change the cell rule label to "SRI"</p>
</div>
)
},
{
target: '#importCellParamsCellName',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Change the template/cell name to "SRI"</p>
</div>
)
},
{
target: '#importCellParamsFileName',
target: '.fa-folder',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Click on the folder icon to select the template.</p>
<p>Click on the folder icon to select the template:</p>
<p> NetPyNE-UI &gt; workspace</p>
<p> &gt; cells &gt; PTcells.hoc</p>
</div>
)
},
{
target: '#TreeContainerCutting_component',
target: '#browserAccept',
content: (
<div>
<p>Select "NetPyNE-UI &gt; workspace &gt; cells &gt; SRI.hoc"</p>
<p>and click on "Select"</p>
</div>
)
},
{
target: '.fa-folder',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Select "NetPyNE tutorials &gt; netpyne_workspace-master &gt; cells &gt; SRI.hoc".</p>
<p>Click on the folder icon to select the folder containing the "mod" file:</p>
<p>"NetPyNE-UI &gt; workspace &gt; mod</p>
</div>
),
collectionIndex: 1
},
{
target: '#browserAccept',
content: (
<div>
<p>Select "NetPyNE-UI &gt; workspace &gt; mod"</p>
<p>and click on "Select"</p>
</div>
)
},
{
target: '#importCellParamsModFolder',
target: '#importCellParamsCompileMod',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Click on the folder icon to select the folder containing the "mod" file.</p>
<p>Activate the compilation of mod files</p>
</div>
)
},
{
target: '#TreeContainerCutting_component',
target: '#appBarPerformActionButton',
title: (
<div>Cell Creation</div>
),
content: (
<div>
<p>Select, as for the last created cell:</p>
<p>"NetPyNE tutorials &gt; netpyne_workspace-master &gt; mod".</p>
<p>Click on "Import" to import the cell template.</p>
</div>
)
},
// New cell population
{
target: 'img[src*="popParams"]',
title: (
<div>Population Update</div>
<div>Population Creation</div>
),
content: (
<div>
<p>Click on "Populations" to create new cells populations.</p>
</div>
)
}, //newPopulationButton
{
target: '#newPopulationButton',
title: (
<div>Population Creation</div>
),
content: (
<div>
<p>Click on "Populations" to change cells populations.</p>
<p>Create a new population for PTcell</p>
</div>
)
},
{
target: 'div.MuiBox-root.scrollbar.scrollchild > div.MuiBox-root > div',
title: (
<div>Population Creation</div>
),
content: (
<p>Change the population name to "E"</p>
)
},
{
target: 'div[id^="netParamspopParams"][id$="cellType"]',
title: (
<div>Population Creation</div>
),
content: (
<p>Select "PTcell"</p>
)
}, //netParamspopParamsPopulation0numCells
{
target: 'input[id^="netParamspopParams"][id$="numCells"]',
title: (
<div>Population Creation</div>
),
content: (
<p>Enter 2 as number of cells</p>
)
},
{
target: '#newPopulationButton',
title: (
<div>Population Creation</div>
),
content: (
<div>
<p>Create a new population for SRI</p>
</div>
)
},
{
target: 'div.MuiBox-root.scrollbar.scrollchild > div.MuiBox-root > div',
title: (
<div>Population Creation</div>
),
content: (
<p>Change the population name to "I"</p>
)
},
{
target: 'div[id^="netParamspopParams"][id$="cellType"]',
title: (
<div>Population Creation</div>
),
content: (
<p>Select "SRI"</p>
)
}, //netParamspopParamsPopulation0numCells
{
target: 'input[id^="netParamspopParams"][id$="numCells"]',
title: (
<div>Population Creation</div>
),
content: (
<p>Enter 2 as number of cells</p>
)
},
// Network creation
{
target: '.MuiGrid-item .MuiButton-root:nth-last-child(2)',
title: (
Expand Down