Skip to content

PALEOMIX v1.2.3

Choose a tag to compare

View all tags
@MikkelSchubert MikkelSchubert released this 11 Mar 17:18
· 873 commits to main since this release
v1.2.3
7f98d22

Minor revision:

2016-03-11: Added the ability to the pipelines to output the list of input
          files required for a given makefile, excluding any file built
          by the pipeline itself. Use the --list-output-files command-
          line option to view these.
2016-03-11: Updated 'bam_pipeline' makefile template; prefixes and targets
          are described more explicitly, and values for the prefix are
          commented out by default. The 'Label' option is no included in
          the template, as it is considered deprecated.
2016-03-11: Allow the 'trim_pipeline' to be run on a makefile without any
          prefixes; this eases use of this pipeline in the case where a
          latter mapping is not wanted.
2016-03-11: Improved handling of unmapped reads in 'paleomix cleanup';
          additional flags (in particular 0x2; proper alignment) are now
          cleared if the mate is unmapped, and unmapped reads are always
          represented on the positive strand (clearing 0x4 and / or 0x20).
Assets 2
Loading