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PALEOMIX v1.3.2

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@MikkelSchubert MikkelSchubert released this 03 Sep 19:04
v1.3.2
cfe0774

Minor bug-fix release.

Added

  • Added -v and --version to all command-line tools.
  • Added the default values (if any) to the help-strings of all command-line options.

Changed

  • Decoupled --log-level from command-line logging. Changed default log-level to
    ERROR and made it apply to automatically generated log files as well.

Fixed

  • Fixed the pipeline failing on jre_options (now jre-option) in config files.
  • Fixed the pipeline failing on empty options in config files from PALEOMIX v1.2.x.
  • Fixed Bowtie2 using command-line options from the BWA makefile section
  • Fixed conda installation instructions and environment file for PALEOMIX 1.3.x.
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