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Welcome to the grave wiki!

For the quickstart, see the main README

NOTE: This Wiki is under construction.

If a specific grave featue or behaviour is not clear, please make a GitHub Issue and it will be prioritised for further documentation.

Process detail

• MAKE_HAPL#Haplotype sampling mode
• MAKE_FILTER#Filtered graph mode
• PROCESS_GRAPH
• COMPUTE_SNARLS
• FASTP
• FASTQC
• FASTQ_MERGE_DEDUP
• PANGENOME_MAP
• VG_SURJECT
• BAM_DEDUP
• PROFILE_PMD
• VG_DECONSTRUCT
• VG_GENOTYPE
• FREEBAYES
• DEEPVARIANT
• PROCESS_DEEPVARIANT