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Welcome to the grave wiki!

For the quickstart, see the main README

NOTE: If a specific grave feature or behaviour is not clear, please make a GitHub Issue and it will be prioritised for further documentation.

Details of individual processes

• MAKE_HAPL
• MAKE_FILTER
• PROCESS_GRAPH
• COMPUTE_SNARLS
• VG_DECONSTRUCT
• FASTP
• FASTQC
• PANGENOME_MAP
• VG_GENOTYPE
• GAM_TO_TAGGED_SORTED_BAM
• MERGE_BAMS
• DEDUPLICATE
• PROFILE_PMD
• FREEBAYES
• DEEPVARIANT
• PROCESS_DEEPVARIANT

FAQ

Common questions will be added here!