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cecilehannay merged 2 commits into from
Jul 9, 2025
Merged

Fix project number and links #295

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a0e3447
Merge remote-tracking branch 'upstream/main'
cecilehannay Jul 9, 2025
744b196
fix project number and links
cecilehannay Jul 9, 2025
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2 changes: 1 addition & 1 deletion notebooks/challenge/cam-chem_waccm/exercise_1.ipynb
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Expand Up @@ -130,7 +130,7 @@
"cd /glade/u/home/$USER/code/my_cesm_code/cime/scripts/\n",
"./create_newcase --case $CASEDIR --res $RESOLUTION --compset $COMPSET\n",
"```\n",
"You may need to add ``--project \"UESM0013\"`` when creating a new case.\n",
"You may need to add ``--project \"UESM0014\"`` when creating a new case.\n",
"\n",
"**# Change the job queue and account number**\n",
"\n",
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2 changes: 1 addition & 1 deletion notebooks/challenge/cam-chem_waccm/exercise_2.ipynb
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Expand Up @@ -123,7 +123,7 @@
"cd /glade/u/home/$USER/code/my_cesm_code/cime/scripts/\n",
"./create_newcase --case $CASEDIR --res $RESOLUTION --compset $COMPSET\n",
"```\n",
"You may need to add ``--project \"UESM0013\"`` when creating a new case.\n",
"You may need to add ``--project \"UESM0014\"`` when creating a new case.\n",
" \n",
"**# Change the job queue and account number**\n",
"\n",
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2 changes: 1 addition & 1 deletion notebooks/challenge/cam-chem_waccm/exercise_3.ipynb
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Expand Up @@ -99,7 +99,7 @@
"cd /glade/u/home/$USER/code/my_cesm_code/cime/scripts/\n",
"./create_newcase --case $CASEDIR --res $RESOLUTION --compset $COMPSET\n",
"```\n",
"You may need to add ``--project \"UESM0013\"`` when creating a new case.\n",
"You may need to add ``--project \"UESM0014\"`` when creating a new case.\n",
"\n",
"**# Change the job queue and account number**\n",
"\n",
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2 changes: 1 addition & 1 deletion notebooks/challenge/clm_ctsm/clm_exercise_1.ipynb
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Expand Up @@ -65,7 +65,7 @@
"If needed, change <font face=\"Courier\" color='purple'><strong>job queue</strong></font>, <font face=\"Courier\" color='purple'><strong>account number</strong></font>, or <font face=\"Courier\" color='purple'><strong>wallclock time</strong></font>. \n",
"For instance:\n",
"``` \n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013 --force,JOB_WALLCLOCK_TIME=0:15:00\n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0014 --force,JOB_WALLCLOCK_TIME=0:15:00\n",
"```\n",
"<br>\n",
"\n",
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2 changes: 1 addition & 1 deletion notebooks/challenge/clm_ctsm/clm_exercise_2.ipynb
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Expand Up @@ -90,7 +90,7 @@
"If needed, change <font face=\"Courier\" color='purple'><strong>job queue</strong></font>, <font face=\"Courier\" color='purple'><strong>account number</strong></font>, or <font face=\"Courier\" color='purple'><strong>wallclock time</strong></font>. \n",
"For instance:\n",
"``` \n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013 --force,JOB_WALLCLOCK_TIME=0:15:00\n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0014 --force,JOB_WALLCLOCK_TIME=0:15:00\n",
"```\n",
"<br>\n",
"\n",
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2 changes: 1 addition & 1 deletion notebooks/challenge/clm_ctsm/clm_exercise_3.ipynb
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Expand Up @@ -99,7 +99,7 @@
"If needed, change <font face=\"Courier\" color='purple'><strong>job queue</strong></font>, <font face=\"Courier\" color='purple'><strong>account number</strong></font>, or <font face=\"Courier\" color='purple'><strong>wallclock time</strong></font>. \n",
"For instance:\n",
"``` \n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013 --force,JOB_WALLCLOCK_TIME=0:15:00\n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0014 --force,JOB_WALLCLOCK_TIME=0:15:00\n",
"```\n",
"<br>\n",
"\n",
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6 changes: 3 additions & 3 deletions notebooks/challenge/paleo/exercise_1.ipynb
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Expand Up @@ -79,7 +79,7 @@
"set RUNDIR=/glade/derecho/scratch/$USER/$CASENAME/run\n",
"set COMPSET=B1850\n",
"set RESOLUTION=f19_g17\n",
"set PROJECT=UESM0013\n",
"set PROJECT=UESM0014\n",
"```\n",
"\n",
"Note: You should use the project number given for this tutorial.\n",
Expand All @@ -92,7 +92,7 @@
"export RUNDIR=/glade/derecho/scratch/$USER/$CASENAME/run\n",
"export COMPSET=B1850\n",
"export RESOLUTION=f19_g17\n",
"export PROJECT=UESM0013\n",
"export PROJECT=UESM0014\n",
"```\n",
"\n",
"Note: You should use the project number given for this tutorial.\n",
Expand Down Expand Up @@ -143,7 +143,7 @@
"\n",
"\n",
"**# Set run length**\n",
"\n",
"\n",
"```\n",
"./xmlchange STOP_N=1,STOP_OPTION=nyears\n",
"```\n",
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13 changes: 6 additions & 7 deletions notebooks/challenge/paleo/exercise_2.ipynb
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Expand Up @@ -94,7 +94,7 @@
"set RUNDIR=/glade/derecho/scratch/$USER/$CASENAME/run\n",
"set COMPSET=B1850\n",
"set RESOLUTION=f19_g17\n",
"set PROJECT=UESM0013\n",
"set PROJECT=UESM0014\n",
"```\n",
"\n",
"You should use the project number given for this tutorial.\n",
Expand All @@ -107,7 +107,7 @@
"export RUNDIR=/glade/derecho/scratch/$USER/$CASENAME/run\n",
"export COMPSET=B1850\n",
"export RESOLUTION=f19_g17\n",
"export PROJECT=UESM0013\n",
"export PROJECT=UESM0014\n",
"```\n",
"\n",
"You should use the project number given for this tutorial.\n",
Expand Down Expand Up @@ -158,14 +158,14 @@
"\n",
"\n",
"**# Set run length**\n",
"\n",
"\n",
"```\n",
"./xmlchange STOP_N=1,STOP_OPTION=nyears\n",
"```\n",
"\n",
"\n",
"**# Add the following to user_nl_cpl**\n",
"\n",
"\n",
"```\n",
"orb_mode = 'fixed_parameters' \n",
" orb_eccen = 0.018682\n",
Expand Down Expand Up @@ -238,7 +238,7 @@
},
{
"cell_type": "markdown",
"id": "65b2cbda-2d54-48ee-898b-4c391f16ca79",
"id": "55ecb7d3",
"metadata": {},
"source": [
"\n",
Expand Down Expand Up @@ -283,8 +283,7 @@
"- Which orbital parameters are different at the middle Holocene (6 ka BP)? \n",
"- How does the orbital parameter impact the top-of-atmosphere shortwave radiation (solar insolation) during summertime in the Northern Hemisphere? \n",
"- Do the results look correct? You can compare your results with Figure 3b of [Otto-Bliesner et al., (2017)](https://doi.org/10.5194/gmd-10-3979-2017) \n",
"- What other aspects of climate are different between the mid-Holocene and pre-industrial runs?",
"\n",
"- What other aspects of climate are different between the mid-Holocene and pre-industrial runs?\n",
"</details>\n",
"</div>\n"
]
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4 changes: 2 additions & 2 deletions notebooks/challenge/paleo/exercise_3.ipynb
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Expand Up @@ -86,7 +86,7 @@
"set RUNDIR=/glade/derecho/scratch/$USER/$CASENAME/run\n",
"set COMPSET=B1850C5\n",
"set RESOLUTION=f19_g16\n",
"set PROJECT=UESM0013\n",
"set PROJECT=UESM0014\n",
"```\n",
"\n",
"Note: You should use the project number given for this tutorial.\n",
Expand All @@ -99,7 +99,7 @@
"export RUNDIR=/glade/derecho/scratch/$USER/$CASENAME/run\n",
"export COMPSET=B1850C5\n",
"export RESOLUTION=f19_g16\n",
"export PROJECT=UESM0013\n",
"export PROJECT=UESM0014\n",
"```\n",
"\n",
"Note: You should use the project number given for this tutorial.\n",
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2 changes: 1 addition & 1 deletion notebooks/diagnostics/pop/basics_pop.ipynb
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Expand Up @@ -206,7 +206,7 @@
" queue=\"casper\", # The type of queue to utilize (/glade/u/apps/dav/opt/usr/bin/execcasper)\n",
" log_directory=f\"/glade/derecho/scratch/{username}/dask/\", # Use your local directory\n",
" resource_spec=\"select=1:ncpus=1:mem=8GB\", # Specify resources\n",
" project=\"UESM0013\", # Input your project ID here\n",
" project=\"UESM0014\", # Input your project ID here\n",
" walltime=\"02:00:00\", # Amount of wall time\n",
")\n",
"# cluster.adapt(maximum_jobs=24, minimum_jobs=2) # If you want to force everything to be quicker, increase the number of minimum jobs, \n",
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4 changes: 2 additions & 2 deletions notebooks/namelist/exercises/exercise_cam_output.ipynb
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Expand Up @@ -149,9 +149,9 @@
"**# Change the job queue and account number**\n",
"\n",
"If needed, change `job queue` and `account number`. <br>\n",
"For instance, to run in the queue `tutorial` and the project number ``UESM0013`` (You should use the project number given for this tutorial), use the command:\n",
"For instance, to run in the queue `tutorial` and the project number ``UESM0014`` (You should use the project number given for this tutorial), use the command:\n",
"``` \n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013 --force\n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0014 --force\n",
"```\n",
"\n",
"**# Build and submit**\n",
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4 changes: 2 additions & 2 deletions notebooks/namelist/exercises/exercise_tuning_parameter.ipynb
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Expand Up @@ -112,9 +112,9 @@
"**# Change the job queue and account number**\n",
"\n",
"If needed, change `job queue` and `account number`. <br>\n",
"For instance, to run in the queue `tutorial` and the project number `UESM0013`, use the command:\n",
"For instance, to run in the queue `tutorial` and the project number `UESM0014`, use the command:\n",
"``` \n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013 --force\n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0014 --force\n",
"```\n",
"\n",
"\n",
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5 changes: 3 additions & 2 deletions notebooks/namelist/overview.ipynb
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Expand Up @@ -66,7 +66,8 @@
"source": [
"<div class=\"alert alert-info\">\n",
"\n",
"Complete documentation about the namelist variables can be found on the [CESM webpage.](https://www2.cesm.ucar.edu/models/cesm2/settings/current/)\n",
"Complete documentation about the namelist variables can be found on the [CESM webpage.]\n",
"(https://docs.cesm.ucar.edu/models/cesm2/settings/current/)\n",
"\n",
"</div>"
]
Expand Down Expand Up @@ -96,7 +97,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.9.12"
"version": "3.10.13"
}
},
"nbformat": 4,
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8 changes: 4 additions & 4 deletions notebooks/resources/profile.ipynb
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Expand Up @@ -16,7 +16,7 @@
"### Tutorial Project Account\n",
"\n",
"<div class=\"alert alert-warning\">\n",
"You should have access to project account <strong>UESM0013</strong> and use this for your simulations.\n",
"You should have access to project account <strong>UESM0014</strong> and use this for your simulations.\n",
"</div>\n",
"\n"
]
Expand Down Expand Up @@ -62,7 +62,7 @@
"\n",
"```\n",
"./xmlchange --force JOB_QUEUE=R???????\n",
"./xmlchange PROJECT=UESM0013\n",
"./xmlchange PROJECT=UESM0014\n",
"```\n",
"\n",
"For instance, on Wednesday\n",
Expand Down Expand Up @@ -347,7 +347,7 @@
"Add to your .profile: \n",
"\n",
"```\n",
"export PROJECT=UESM0013 #<- This should never change over the course of the tutorial\n",
"export PROJECT=UESM0014 #<- This should never change over the course of the tutorial\n",
"export TUTORIAL_QUEUE=R??????? #<- This will be different for every practical. \n",
" #<- Look at the schedule below:\n",
"```\n",
Expand All @@ -365,7 +365,7 @@
"\n",
"Add to your .tcshrc: \n",
"```\n",
"setenv PROJECT UESM0013 #<-This should never change over the course of the tutorial\n",
"setenv PROJECT UESM0014 #<-This should never change over the course of the tutorial\n",
"setenv TUTORIAL_QUEUE R??????? #<-This will be different for every practical \n",
" #<- Look at the schedule below:\n",
"```\n",
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8 changes: 4 additions & 4 deletions notebooks/resources/tutorial_specific.ipynb
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Expand Up @@ -16,12 +16,12 @@
"### Tutorial Project Account\n",
"\n",
"<div class=\"alert alert-warning\">\n",
"You should have access to project account <strong>UESM0013</strong> and use this for your simulations.\n",
"You should have access to project account <strong>UESM0014</strong> and use this for your simulations.\n",
"</div>\n",
"\n",
"You can change the account in your case directory using the following command:\n",
"```\n",
"./xmlchange PROJECT=UESM0013\n",
"./xmlchange PROJECT=UESM0014\n",
"```"
]
},
Expand Down Expand Up @@ -304,7 +304,7 @@
"Add to your .profile: \n",
"\n",
"```\n",
"export PROJECT=UESM0013 #<- This should never change over the course of the tutorial\n",
"export PROJECT=UESM0014 #<- This should never change over the course of the tutorial\n",
"export TUTORIAL_QUEUE=tutorial #<- Special queue for the tutorial\n",
"```\n",
"\n",
Expand All @@ -321,7 +321,7 @@
"\n",
"Add to your .tcshrc: \n",
"```\n",
"setenv PROJECT UESM0013 #<-This should never change over the course of the tutorial\n",
"setenv PROJECT UESM0014 #<-This should never change over the course of the tutorial\n",
"setenv TUTORIAL_QUEUE tutorial #<- Special queue for the tutorial\n",
"```\n",
" \n",
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4 changes: 2 additions & 2 deletions notebooks/sourcemods/exercises/exercise_add_field.ipynb
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Expand Up @@ -154,10 +154,10 @@
"**# Change the job queue and account number**\n",
"\n",
"If needed, change `job queue` and `account number`. <br>\n",
"For instance, to run in the queue `tutorial` and the project number `UESM0013`, use the command:\n",
"For instance, to run in the queue `tutorial` and the project number `UESM0014`, use the command:\n",
"\n",
"``` \n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013 --force\n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0014 --force\n",
"```\n",
"\n",
"**# Build and submit**\n",
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2 changes: 1 addition & 1 deletion notebooks/sourcemods/exercises/exercise_rain_threshold.ipynb
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Expand Up @@ -106,7 +106,7 @@
"If needed, change `job queue` and `account number` \n",
"For instance:\n",
"``` \n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013 --force\n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0014 --force\n",
"```\n",
"\n",
"Build and submit:\n",
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4 changes: 2 additions & 2 deletions notebooks/troubleshooting/exercises/troubleshooting_cam.ipynb
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Expand Up @@ -114,10 +114,10 @@
"**# Change the job queue and account number**\n",
"\n",
"If needed, change `job queue` and `account number`. <br>\n",
"For instance, to run in the queue `tutorial` and the project number ``UESM0013`` (you should use the project number given for this tutorial), use the command:\n",
"For instance, to run in the queue `tutorial` and the project number ``UESM0014`` (you should use the project number given for this tutorial), use the command:\n",
"\n",
"``` \n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013 --force\n",
"./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0014 --force\n",
"```\n",
"\n",
"**# Build and submit**\n",
Expand Down